| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3166 |
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| Symbol | |
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| ID | 8020850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 3341252 |
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| End bp | 3343306 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644831962 |
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| Product | oligopeptide transporter, OPT family |
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| Protein accession | YP_002983105 |
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| Protein GI | 241664745 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1297] Predicted membrane protein |
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| TIGRFAM ID | [TIGR00728] oligopeptide transporters, OPT superfamily
[TIGR00733] putative oligopeptide transporter, OPT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCCC TCCATCCTCC CAAGCACCTT CCGGCAGCGA CCCTGCCTGA GCTGACGCTG
CGCGGCATGA TCCTCGGCGC GATCATCACC GTGATCTTTA CCGCTTCAAA CGTCTACCTG
GGCCTGAAAG TCGGCCTGAC GTTCTCATCG GCAATTCCGG CAGCGGTCAT TTCGATGGCA
GTGCTGCGCA TGCTCGGCGG CACGAACATC CTTGAGAACA ACATGGTGCA GACGCAGGCG
TCTGCGGCCG GGACGCTGTC TTCGATCATC TTCATTCTGC CCGGGCTGGT GATGATCGGG
CACTGGCAAG GCTTCCCATT TTGGCAAACG TTTGGAGTCT GCATGGCGGG CGGCATGCTC
GGCGTGGTGT TCACGATTCC GCTGCGCCAC GCGATGGTGG TGCAAAGCGA CCTGCCCTAT
CCCGAAGGCG TGGCGGCGGC AGAAATTCTG CGCGTGGGCA GTGGCGAGCC AGCGGACGGT
GAAGCCGCTG CCGATGACGA CGCTGTTCCC GCCGCCACCG GCATGCGCGA TCTGGCAGCG
GGTGGCATCG TCGCGGCCAT CGTGGCGTTT GCCACCAGCG GCCTGCGCTT GCTCGGAGAA
GGTGCGAGCT GGTGGTTCGC TGCGGGCGCC GCGGTGGTGC GCTTGCCCAT GGGTTTTTCG
ACTGCGCTGC TGGGCGCGGG CTATCTGATC GGCCTGGTGG CGGGGCTGGC CATGCTGGTG
GGCCTGGTGA TCGCCTGGGG CATCGCCGTG CCGTATCTGA CGTCCATCAC GCCGATGCCG
GCGGGCAAGG CGCTCTCGGC TTTTGGCACG GATGTGTGGC GCACGCAGGT CCGTTTTATC
GGCGCTGGCG TGATTGCGGT GGCGGCCGTG TGGACGCTGG GCACGCTGAT CGGCCCGGTG
GTGCACGGCG TGAAGCGCTC GTTTGGCAGC CTGCGCCCGA AGGCTGATGG CGCGCTGCGC
ACCGAGCAGG ACATGGCGCC GCGCTGGATT CTGCTGGTCA CGCTTGCGAT GGTCGTGGTA
CTGGTGATCA CCTTCGCCGC ATTTCTGGCG CCGACCATGC TGTCGGCCGG CTCGCGCTGG
ACGCTGATCA CGTTCGCGGT GATTTTTGCG GTGGTGTTCG GCTTTCTGGT GGCGGCGGCG
TGCGGCTACA TGGCCGGGCT GATCGGTTCG TCGTCGAGCC CGATTTCGGG CATCGGCATC
ATCGCCATCA CCTTGGTGTC GCTGCTGCTG TTGGCCATCG GCGCGGACAA CGGCATCGTG
GGCTCGCCCG AAGCGAGCAA GCTGGGCATT GCGCTGGCGA TCTTAACAAC GTCGGCCGTG
GTGGCCGTGG CGACCATCTC CAACGATAAC CTGCAGGATC TGAAGACCGG CTGGCTGGTC
GGGGCCACGC CGTGGCGCCA GCAGGTGGCG CTGCTGATCG GCTGCGTGGC GGGTGCCGCG
GTCATCTCGC CGGTGCTGGA GCTGCTGTAT AACGCGTATG GCTTTCCGGG TGCGCTGCCA
CGTGCCGGCA TGGATGCGGC GCAGGCGCTG TCGGCTCCGC AGGCGACGCT CATGACAGCC
ATCGCCACCG GCATCTTCAC GCACCAGCTG CAGTGGAACA TGGTGATTGC AGGCATCGTC
ATCGGCGTGC TGCTGATCGC CGTCGACTGG GCGCTCAAGC AACGCGGCGG CGTTGCGCGG
CTGCCGGTCC TGGCAGTGGG CATCGGCATC TATCTGCCGC CGACGGTCAG CACGGTGCTG
GTGGCCGGTG CGGTGCTGGC GTGGATCATC GAAAAGATTC TTGCCAAGCG CGCGCAGGCG
GCCGGCGTGC CGTACGAGCG CTATGCCGAG GTGCCGAACC GCCACGGCGT GCTACTGGCG
TCGGGCCTGA TCGTGGGCGA AAGTCTGGTG GGTGTGCTGA TGGCGGCAGT GATCGGCAGC
ACGGGCAAGG ATGCGCCGCT GGCCATCGTG GGGGCGTCGT TTGAAGGCAC GGCGCAATGG
CTTGGGCTGA TCGTCTTCGC CTTGGTATGC TGGGCCTTCG CGCGCCGCGT ACTGGCGGTG
CGTCCGACTC ATTGA
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| Protein sequence | MQSLHPPKHL PAATLPELTL RGMILGAIIT VIFTASNVYL GLKVGLTFSS AIPAAVISMA
VLRMLGGTNI LENNMVQTQA SAAGTLSSII FILPGLVMIG HWQGFPFWQT FGVCMAGGML
GVVFTIPLRH AMVVQSDLPY PEGVAAAEIL RVGSGEPADG EAAADDDAVP AATGMRDLAA
GGIVAAIVAF ATSGLRLLGE GASWWFAAGA AVVRLPMGFS TALLGAGYLI GLVAGLAMLV
GLVIAWGIAV PYLTSITPMP AGKALSAFGT DVWRTQVRFI GAGVIAVAAV WTLGTLIGPV
VHGVKRSFGS LRPKADGALR TEQDMAPRWI LLVTLAMVVV LVITFAAFLA PTMLSAGSRW
TLITFAVIFA VVFGFLVAAA CGYMAGLIGS SSSPISGIGI IAITLVSLLL LAIGADNGIV
GSPEASKLGI ALAILTTSAV VAVATISNDN LQDLKTGWLV GATPWRQQVA LLIGCVAGAA
VISPVLELLY NAYGFPGALP RAGMDAAQAL SAPQATLMTA IATGIFTHQL QWNMVIAGIV
IGVLLIAVDW ALKQRGGVAR LPVLAVGIGI YLPPTVSTVL VAGAVLAWII EKILAKRAQA
AGVPYERYAE VPNRHGVLLA SGLIVGESLV GVLMAAVIGS TGKDAPLAIV GASFEGTAQW
LGLIVFALVC WAFARRVLAV RPTH
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