Gene Rpic12D_3165 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3165 
Symbol 
ID8020849 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp3339587 
End bp3340657 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content63% 
IMG OID644831961 
ProductIntegrase catalytic region 
Protein accessionYP_002983104 
Protein GI241664744 
COG category[L] Replication, recombination and repair 
COG ID[COG2826] Transposase and inactivated derivatives, IS30 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGACAAA GCTACGAACA CCTGAGCGCC GAGGAGCGTG GTGCGATCTT CGCGATGAAG 
CTGGAGCAGC GAAGCACGCG GGAGATTGCG CGTGCACTGC AACGCTCAGC CAGCACGATC
AGCCGGGAGC TTCGGCGCAA CGGCTGGAAA CCGGAACAAG AGCGTGGCCC AATGGGGCGG
CCCACGATCG CCGGTGGCTA CAATGCGGTG CGCGCCGGTC AGCGGGCCTC CAGATTGCGA
CGCAAGCCCC GTCGTGAGCG CAAGTTGTGC CGACAAGGCA AGCTGTGGCC TGAGGTGCGC
CAATACCTGG AGAGACGCTT CTCGCCAGAG CAGGTGGCTG CACAGCTCAA ACGTGTCCAT
CCCGGCGAAC CTGCTTTGAA CGTCTCCCAC GAAACGATCT ACCACGCTAT TTATGCCGCG
CCACGCGGTG CGCTGCGGCG CGAGTTGGTC AGCCTGCTGC GACAGGCGCA CGGTGCCCGC
AAGCCTCGCT CGCGCGGGCA GGACCGGCGC GGGCAACTCA ACGACATGGT GAGCATTCAT
GTGCGCCCGC CTGAGGCCAA CGATCGGCTG ATCCCGGGGC ACTGGGAGGG TGACCTGATC
AAAGGGGCTG GTAACCGCTC GGCAGTCGGT ACGCTCATCG ATCGCAGCAC CTTGTTCCTG
ATGCTGGTGA AGATCGACGG CAGTACCGCC GAGGCCGCCT TGCAGGCCTA CAGCGCCGCG
TTCGCGCCCT TGCCCGAGGA GTTGCGCAAG ACGCTGACGT ACGACCAGGG CAAGGAAATG
GCGCTACATC GCAAGCTCGC CGAGGCGACA GGTATTCGGA TCTACTTCTG TGACCCGCAC
AGCCCCTGGC AGCGCGGCAT CTGCGAAAAC ACCAATGGTC TGCTGCGCCA GTACTTGCCA
AAGGGAGCAG ACCTCTCGGT GCTCTCACAG CGTCAGCTTG ACGCGATTGC GCTGTCGATG
AACACCCGAC CGCGTAAAAC ACTCGGCTGG CGCACTCCCG CAGAAGCCTT CATTGAGAAC
TGCGCCAAGC ACGGAATCGT CATTGACCCC GCTGTTGCAC TTGGGGCTTG A
 
Protein sequence
MGQSYEHLSA EERGAIFAMK LEQRSTREIA RALQRSASTI SRELRRNGWK PEQERGPMGR 
PTIAGGYNAV RAGQRASRLR RKPRRERKLC RQGKLWPEVR QYLERRFSPE QVAAQLKRVH
PGEPALNVSH ETIYHAIYAA PRGALRRELV SLLRQAHGAR KPRSRGQDRR GQLNDMVSIH
VRPPEANDRL IPGHWEGDLI KGAGNRSAVG TLIDRSTLFL MLVKIDGSTA EAALQAYSAA
FAPLPEELRK TLTYDQGKEM ALHRKLAEAT GIRIYFCDPH SPWQRGICEN TNGLLRQYLP
KGADLSVLSQ RQLDAIALSM NTRPRKTLGW RTPAEAFIEN CAKHGIVIDP AVALGA