Gene Rpic12D_3156 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3156 
Symbol 
ID8020840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp3325508 
End bp3326992 
Gene Length1485 bp 
Protein Length494 aa 
Translation table11 
GC content65% 
IMG OID644831952 
Productcoproporphyrinogen III oxidase 
Protein accessionYP_002983095 
Protein GI241664735 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR00538] oxygen-independent coproporphyrinogen III oxidase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.574693 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTCCGT TCGCGAAAAT GGCTGACACT CCGTCTGCCG AAAATGACAC CGCCTTCCGC 
TGGTCGGCGC CGCAGGTGCG CGCGCTCGCG CAGCGCTTTG ATACGTACGG CCCGCGCTAC
ACCTCGTACC CAACGGCCGA CCGCTTCCAC AACGGGTTCG GCAACTCCGA CTATCTCGAC
GCCTTGCACC GCCGCGCCGC GATCGCGCCC GCGCTGCATG CGCCGCTGTC GCTGTACATG
CACCTGCCGT TCTGCGCGAA CCTTTGCTAC TACTGCGGCT GCAACAAGGT CATCACAAAG
GACCGCTCGC GCAGCGCCCG CTACGTTGAA ACGCTCGCGC GCGAGATGGC GATGGTGGCC
AGCCAGATTG GCCCACTGCG CCGCGTGACG CAGTTGCATT GGGGCGGCGG CACGCCGACT
TTTCTTGCGC ACGACGAAAT GCGTGCCGTG ATGGCCGCCA CGCGCGAGCA TTTCGACGTG
GCCAACGATG GCGAGATCTC CGTCGAACTC GACCCGCGCC ATGCCGACGA CGCCACGCTC
GAAGTCTTGG CTGAAATCGG CTTCAACCGC GCAAGCCTGG GCATCCAAGA CTTCGACCCC
GACGTCCAGC GCGCCGTCCA CCGCATCCAA AGTGTGGAAG AGACGCGCCG TGTGGTCGAT
ACCGCGCGCC GGCTGGGCCT CGAGTCGATC AGCTTCGACC TGATCTACGG CTTGCCATAT
CAGCGCACGG AAACCTTCAA CGCCACGCTG GATCGCGTGC TGGAGATGGC GCCCGATCGG
CTGTCCGTCT ACAGCTATGC GCATCTGCCG CACCTGTTCA AGGCGCAGCG CCGCATCGAC
ATGTTCACGC TGCCTACCGC CGACGAGAAG CTCGACTTAC TCGCCATGAC GGTCGAGCGG
CTCGTCGCCG AAGGCTATGT CTACATCGGC ATGGATCACT TCGCGCGGCC TGACGATGCA
CTTGCCATTG CGCAGCGTGA AGGGCGGCTG CAGCGCAATT TCCAGGGCTA TTCCACGCAC
GCCGATTGCG ACATGCTGGC GTTTGGCGTG TCCGCCATCA GCCGCGTGGG CGATGTGTAT
GCGCAGAACG AAAAGGATCT CGACGCTTAC TACGCTCGCA TCGACGCAGG CGAGCTGGCC
GTGCTGCGCG GCATGTCGCT CACGCCGGAC GATCACGTGC GCCGCGCGCT GATCGGCGAG
CTGATGTGCG GATTTGAATT GAACATGCGC GCATTCGGCG CGCGCCACGG GCTGGACTTC
AAGCGCAGTT TTGCGGACGA GTTGCAGGCG CTGGCGCCGC TGGAAGAAGC CGGGCTGGTG
AAGGTCGGGG ACGAGCGCAT CGTCATCACA CCGCAAGGGC GGCTGCTCGT GCGCCGCATC
GCGATGGTGT TCGATGCGCA CCTGCGCGAG GCGGGCACGG AGCGCGCGAT GGAAGCCGAG
GGCAAGCCCG TCACCTTCGT CCCGCGCTAC TCCAAGGTGG TCTGA
 
Protein sequence
MFPFAKMADT PSAENDTAFR WSAPQVRALA QRFDTYGPRY TSYPTADRFH NGFGNSDYLD 
ALHRRAAIAP ALHAPLSLYM HLPFCANLCY YCGCNKVITK DRSRSARYVE TLAREMAMVA
SQIGPLRRVT QLHWGGGTPT FLAHDEMRAV MAATREHFDV ANDGEISVEL DPRHADDATL
EVLAEIGFNR ASLGIQDFDP DVQRAVHRIQ SVEETRRVVD TARRLGLESI SFDLIYGLPY
QRTETFNATL DRVLEMAPDR LSVYSYAHLP HLFKAQRRID MFTLPTADEK LDLLAMTVER
LVAEGYVYIG MDHFARPDDA LAIAQREGRL QRNFQGYSTH ADCDMLAFGV SAISRVGDVY
AQNEKDLDAY YARIDAGELA VLRGMSLTPD DHVRRALIGE LMCGFELNMR AFGARHGLDF
KRSFADELQA LAPLEEAGLV KVGDERIVIT PQGRLLVRRI AMVFDAHLRE AGTERAMEAE
GKPVTFVPRY SKVV