| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3077 |
|---|
| Symbol | |
|---|
| ID | 8020760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 3252871 |
|---|
| End bp | 3254007 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644831873 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_002983017 |
|---|
| Protein GI | 241664657 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACCA ACGCAGACAG ATTGCGAAAA CCGGCAAGCG ATGCGGCCAT CGCCCACGTG
CCCGTGGAGG AGCGTTATCG CACCTTGGTC GACGCGATAC AGGACTATGC AATCTTCCTC
CTGGATCCCA CAGGTCACAT CGCAAGTTGG AATGCCGGTG CCCAACGCAT CAAGGGCTAT
CACGCCGACG AAATCATCGG CCAGCACTTT TCGGTCTTCT ATCCTGCCGA GGCAATTGCG
CAGAACTATC CGGGCGAAGA ACTCAAACGC GCGGCCGCCC TTGGCCGCTG GGAAGACGAA
GGATGGCGCA TCCGCAAGGA CGGCTCGCGC TTCTGGGCCA ACGTGGTGAT CACTGCCCTG
CGGGATGAAG ACGGCGACCT GATCGGCTTT GCCAAGGTCA CCCGGGACCT GACCGAGCGC
GAGCGGCTCA AGCAGCTCGA GTACGCGAGC GAGCTGGCAT CCCGGGTCGA AGCCACTCGC
GAAGAAGAAA AGAAGCGTAT TGCACGCGAG CTTCATGATG ACCTCGGGCA GCAATTGACT
GCGCTGAAGA TGATCATCAC CGGCCTGCTT GCAGATGACA GCACCACGCC GGAAGCCCTG
GCATACGCGC GCGAAAGAAC ACTGGCGATG AGCCATGCTA TCGACCACGC GCTCGCGTCG
GTCCGGCGTC TTGCCGCGGG CCTGCGGCCG ACCATGCTCG ACGACCTGGG GCTGCTGCCC
GCGCTCGACT GGCTCGTCAC CGATTTCGGA CAACATACCG GCCTGCGGGT CGCACTGAAC
TGCAATACGC ATACGGTGGC GTTCAACGAC GCCGCCTCCA CCGCGCTGTT CAGGATCGTG
CAGGAAGGTC TGACCAATGT TGCCCGGCAT GCGACGTCGG CAACGAAAGT CGTGGTCGAT
CTTCGATGCG ATCGGGCAAA TTGCGAGCTG GCGATTCACA ACGATGGCGC CGTCGTCACG
CACTCCACCA AACCCGCAGC CGGGCGGCCG CCGTCATCGG GGATCGCCGG CATCCGCGAG
CGCGTGCGCC GCCTGGGAGG GACTTTCGCG GCGGGGCCAC TCGCACAGGG CGGCTACCGT
ATCCAGCTTT CGATTCCGCG GAAAGCGATT GCCCTCGATG TGCCATCCGG TCAGTAG
|
|---|
| Protein sequence | MDTNADRLRK PASDAAIAHV PVEERYRTLV DAIQDYAIFL LDPTGHIASW NAGAQRIKGY
HADEIIGQHF SVFYPAEAIA QNYPGEELKR AAALGRWEDE GWRIRKDGSR FWANVVITAL
RDEDGDLIGF AKVTRDLTER ERLKQLEYAS ELASRVEATR EEEKKRIARE LHDDLGQQLT
ALKMIITGLL ADDSTTPEAL AYARERTLAM SHAIDHALAS VRRLAAGLRP TMLDDLGLLP
ALDWLVTDFG QHTGLRVALN CNTHTVAFND AASTALFRIV QEGLTNVARH ATSATKVVVD
LRCDRANCEL AIHNDGAVVT HSTKPAAGRP PSSGIAGIRE RVRRLGGTFA AGPLAQGGYR
IQLSIPRKAI ALDVPSGQ
|
|---|
| |