| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3052 |
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| Symbol | |
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| ID | 8020735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 3219058 |
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| End bp | 3221469 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644831849 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_002982993 |
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| Protein GI | 241664633 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAGA CCATGTACAA CGCCTCTTCC CGACTCACCG TTCGCGCCAT CGTCCTGGCA
TGCTGCGCAA CAATGGTGGC CGGCTCGATG CCAGTCTTCG CCGCCCCGCC CAGCGCGGCA
TCCTCCCAGA ACGGCGCCGC CGGCAACCCA GGGGATGAGG TCTCGCTGAA TTTCGTCAAC
GCGGATCTGG ACTCCGTCGT CAAGGCCGTC GGCCAGGCCA CCGGCAAGAA CTTCATCGTC
GACCCGCGCG TGAAGGGCAC CGTCAACCTC GTCACCGAAA AACCGGTGAC GCGCTCGCAG
GCGCTCGAAT CGCTGGGTTC GATCCTGCGC ATGCAGGGCT ACGCGATTGT CGAGGGCAAC
GGCTTCACCA AGGTCGTGCC GGAAGCCGAC GCCAAGCTGC AGGGCTCGCC CACCAGCGTA
GGCGCGGCAG GCTCACGTGG CGGCGAACAG GTTGTGACGC AGGTCTTCCG CCTGCAGCAC
GAATCGGCCA ACAACCTGGT GCCGGTGCTG CGCCCGATGA TCGCGCCCAA CAATACGATC
ACCGCCTACC CGGCCAACAA CACGCTCGTC ATTACCGATT ACGCCGACAA CCTGCGCCGC
ATCGGCCGCA TCATCGCGTC GATCGACACG CCCGTGGCCG GCGAGACCGA GCTGATTCCG
CTGAAGAACG CCGTGGCCAT CGACGTGGCG GCCACGCTGC AGAAGCTGCT CGATCCGTCG
GCCGGTGGTG CAGGCGGCGC GGCCGGTGCC GGCGCGGCGC TGTCGGACCC GAGCCTGCGT
ACGTCGGTCG TGGCCGAGCC GCGTTCGAAT AGCGTGATGG TGCGTGCGTC GAGTGCGGCA
CGTCTGGCGC AGGCCAAACA ACTGATCGCC AAGCTCGATG TGCCGAATGC ACGCCCGGGC
AACATCTGGG TGGTGCCGCT CAAGAACGCC AACGCGGTGC AGCTGGCGAC GACGCTGCGC
GCGATCGTCG CGGCCGACGC CACGCTGTCG GCCTCCGCAT CGACCGGCCC GGGCGGCCAG
AGCGCCGCGC AAGGCGCGAC CTCGCAGCCG GCGGGCGGCG TGAGCAACGT GCAGAACCAG
AACACGCAGA ACACCAACTA CGGCAGCGGT TCGGGCAGCG GCTCGGGCAG CGGCAGCTCT
TCGTTCCGCG CCTCGTTCGG GCAGAACAAC ACGCCCACCA CCGGCGGCAT CATCCAGGCC
GATCCGGCCA CCAACGCGCT CATCATCACC GCCAGCGAGC CGGTCTACCG CAACCTGCGT
GCCGTGATCG ACGACCTCGA CGCGCGCCGC GCCCAGGTTT ATATCGAATC GATGATCGTT
GAGGTGACGG CTACCAAGGC GTCGCAGCTC GGCATCCAGT GGATGGTGGG CGCAGGCGGC
CCGAATACGT ACGGCGGCGG CGGCACCAAC TTCGGCACGG GTTCGGGCAA CCTGCTCACG
CTGGCCGGCA CCATCGCTAC CATCACCACG GGCGGCATCG GCAGCACGGC GGCGCAGACG
GCGCTGTCGA GCGTAAACGT AGGGCAACTG AACGGCGGCC AGTTCGGCGT GTTCAACAAG
GCCTCGGGCC TTGGCGCGCT GCTCTCCGCG CTGGGCTCGG ACGGTTCGGT CAACGTGTTG
TCGACCCCGA ACCTGATCAC GCTCGACAAC GAAGAAGCCA AGATCCTGAT CGGCCAGAAC
GTGCCGATCA CCACGGGCTC GTATGCGCAG ACGGGCACGT CCGCTTCGGT CACGCCGTTC
CAGACGTTCG ACCGCAAGGA CGTCGGCATC ACGCTGCGCG TCAAGCCGCA GATCACCGAC
GGCGGGCTGG TGAAGATGCA GATCTTCCAG GAGTCGTCGG CCGTGGTGCC GGGCACGCAG
AATGCGACAC AGGGCCCGAC CACCAACGTG CGCTCCATTG AAACGAACGT GCTGGCCAAC
GACGGCCAGG TCGTCGTGTT GGGCGGGCTG CTGGAAGACA ACTATCAGGA CGGCGAGCAG
AAGGTGCCGG GCCTGGGCGA CATCCCCATC CTTGGCGCGC TGTTCCGCTC GGAAAACAAG
ACGCGTGTGA AGACGAACCT GCTGGTGTTC CTGCGCCCCA TCATCCTGCG CACGGCCGAT
GCCACGGGCG CGCTGTCGGA CAACCGCTAC AACTACATGC GCGACACGCA GCAGGGCTTT
GTCTCGCCGA ACATGCTGCC GACCACGTCT GACAAGGACA CGCCGGTGCT ACCCACGCCC
GAGGCCATGC GCCCGGCTGA CAACTACGGC GATGTGTCGA TCGTGCCGAA GGGCCCGGCC
GGTACGCAGG TGCCCCCGGG CGCCCCGATG CCGATGCCGC AAGGCACCAC GCGCAGCCAG
CCGCGCCTGC AGAATTTCGC GGCGCCCACC TCGGGCGGTT ACGACGGCAA CGCGCCGCGC
AATGGCGGCT GA
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| Protein sequence | MNETMYNASS RLTVRAIVLA CCATMVAGSM PVFAAPPSAA SSQNGAAGNP GDEVSLNFVN
ADLDSVVKAV GQATGKNFIV DPRVKGTVNL VTEKPVTRSQ ALESLGSILR MQGYAIVEGN
GFTKVVPEAD AKLQGSPTSV GAAGSRGGEQ VVTQVFRLQH ESANNLVPVL RPMIAPNNTI
TAYPANNTLV ITDYADNLRR IGRIIASIDT PVAGETELIP LKNAVAIDVA ATLQKLLDPS
AGGAGGAAGA GAALSDPSLR TSVVAEPRSN SVMVRASSAA RLAQAKQLIA KLDVPNARPG
NIWVVPLKNA NAVQLATTLR AIVAADATLS ASASTGPGGQ SAAQGATSQP AGGVSNVQNQ
NTQNTNYGSG SGSGSGSGSS SFRASFGQNN TPTTGGIIQA DPATNALIIT ASEPVYRNLR
AVIDDLDARR AQVYIESMIV EVTATKASQL GIQWMVGAGG PNTYGGGGTN FGTGSGNLLT
LAGTIATITT GGIGSTAAQT ALSSVNVGQL NGGQFGVFNK ASGLGALLSA LGSDGSVNVL
STPNLITLDN EEAKILIGQN VPITTGSYAQ TGTSASVTPF QTFDRKDVGI TLRVKPQITD
GGLVKMQIFQ ESSAVVPGTQ NATQGPTTNV RSIETNVLAN DGQVVVLGGL LEDNYQDGEQ
KVPGLGDIPI LGALFRSENK TRVKTNLLVF LRPIILRTAD ATGALSDNRY NYMRDTQQGF
VSPNMLPTTS DKDTPVLPTP EAMRPADNYG DVSIVPKGPA GTQVPPGAPM PMPQGTTRSQ
PRLQNFAAPT SGGYDGNAPR NGG
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