Gene Rpic12D_3011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3011 
Symbol 
ID8020693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp3176277 
End bp3180587 
Gene Length4311 bp 
Protein Length1436 aa 
Translation table11 
GC content66% 
IMG OID644831807 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_002982952 
Protein GI241664592 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.701044 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCGTG CCCTCTTCGC GGTTTCCGCC GTCGTCTGTG CGGCCATCCT CGTTTGGTGG 
GGCGGGGACG GCGCACGGCA AGCCGATACC GGCGACGCTG GGCAGGGGCC GGTGTATCGA
TTAGCCCGCT TTCCGCCGAT GCTCATCGTG GGCGTCATCG GCAACGCGAT GATGCCGCTG
GAGGGCATTG AGGCGGACCG GCTCAGCGGT TTCTCCGGGG ATCTCCTCAT GCAGCTGATC
CCGCACGATC AAGTGCGCGT GGTACCGCGC GTATTCGCAC GGCGCGACGA ACTGCTCAAG
GCAGCATGTC GCGGCGATGT CGACATCATC ATGAGCGTCG CGCCACGCTC CCAATACGAC
CACTGCCTGG AGTATTCGGC ACCGTATCTC GAACGCCCCA CCGCGGTGGT CGCGCGCACG
GAAAACGTCG AAATAGCGCA GAACCCGTTC GGGGCGGGCG TTCGCGTTGC GGTCGAGCAA
GGCTCTTCAC TGGAGGAAGA GCTGGCCCAT GAATACCCGA ACATCGTGCT GGTGAGCACG
CCCACGGCAG CAGACGCTCT GGATGCCGTG CTCGACAAGA CGGTCGACGT CTACGTTGGC
GTCACCTACC CGACACGGGA ATTGATAGCC CGGCCGCGCT ACCGGGAGCT ATCGATCGTG
CAGCTTGCAA ACCAGCAGGT CGATGCGCTC CATTTCGCCG CGCCCCGGGA TCGCGCGACG
CTGATTCGCC ATCTGGATCG CCATCTCGCG CAGTTGCCTG ACACCACGAT GAGCCAACTT
CGCGCGCGCT GGATCGCTCA GGGCGGTACG TCGACCGTGG CGCTGCAATT GTCGGACGAT
GAGCGCGCCA TGCTGGCATC GCTGCCCCCG TTGCGGTATG CAGCCGACCC GGATTACATG
CCGTACACCT TTGACGACAC TGGCGGCGGC CTGCTCGGCA TCTTCCCGGA GTACCAGAAT
TTCCTTTCGC GAACGCTGGG CCTGCAGTTC GAGCGCGTCG CCGTGCGCGA CTGGGCCGAC
GCGCTCGACA AGGCGGCCAA TGGCGAGGTC GACATCTTGC TCGGCATGTC AGATCAGGAT
GCTCGCCCAG CTGGATTTGC GCTCACGCAG CCCATCGACG CCACGCCGCT GGTTATCGTC
GGGCGCAACG ATGCGTTGAC TGTGGCGGCG TTGTCCGAGC TTTCCGGCAA GACGGTCGCA
CTGCCTGCCA GCGATACGCT GACCGCGATC TTGCGCCACA ACGTGCCGAA AATCCGCCTC
GTGTCGGCGG GTTCGGTCGA CAACGCGCTG TCCATGGTGG CAAGCGGCAA AGCCGATTTC
ACCATTGTCA ATCTGCCGGT GGCCGACGCG TTGATCCGCC ACCATTTTCC GGGCGAACTG
AAGGTCACGG GCTCGGCCAA CACGATTGAG AGCATCGGCG TGGGCGTGTC GGCGCGGTAC
GCCGCGCTGG TGCCGCTTAT CAACCGCGCG CTTTTTGCCA TGCCCGAAGG CGAGCAGGTC
AGCATCCGCA ACAAGTGGCT GTCGGTCAGC TATCAGCTCG GTCCTTCGGC GTCGGCCGTG
CTCGGCAAGT TTGGGCCGGT GGCCGCGCTG GTGCTGGCGG CACTGGTGGC GCTCTTCATC
AAGCAGATGC AACTGCGCCG CGAGAATCAT CAGCGCCGCC GCGCTGAAGA AACCCTGGCC
CAACAACTGA GCTTTCAGCG CGCGCTGATG GAGGCCGTGC CGTTCCCGCT CGTCGCCAAA
GACGCCGCGC AGCGTTACGT TGCCGTAAAT GCAGCCTTCT GCAACATGTT TGGCCAACCC
CGCGCTTCGT TGCTGGGGCG CACGCCGCAG GAGCTCGGAC TGTATTCGGT CAGCAACACG
TCGCCGCTGT CTGATATCAA CCAGCGCGCC GCGCAGATCA GCGAAAGCAC GCGCGAAGAA
CTCATCATCG ACACGCCGGA CGGGCAATCG CGCAACGTGC TGTACTGGAT CGAGCCGTTC
CATCTGCCGG ACGGGCAACC CGCGGGCACC GTCGCCTCGC TGGTCGACAT CAGCGAGATT
CGCGACGCGC AGGCCCGCGC GGAACGCCTC GAACAGCGCC TGCGCGAAGT CACCGAATCG
CTGCCCGCGT TGGTCTACCA GTTTGAGCTG CCACCGGGCG AGGTGCAGGG ACGCATCACC
TACGTGGCTG GCAAGGCGCA CGACACGCTG GGCGTCGAGC CGCAGGATTT GCTGCGGTAC
CTGTCCACGC CCGAACTGCT TATTTTTCAG GACGACCGGC AGCGGGTTCT GGAAAGCGTG
CTGGCCTCCG CGCGAGAGTT GACGCCACTC GACCTGCAAT TCCGCCACGT CAGCCCGGAC
GGTTCGGTGC GCTGGCTTCA TGCACGCTCG ATTCCGCACC GCGAGGCGGA CGGCCGCACG
GTCTGGAACG GCTACCTGAG CGATGTCACC ACCGAGCGCG AGCAGGCCGA CGCGTTGGAG
GCGGCCAAGA ACGCAGCGGA ATCGGCGCTG CATGCCAAGG ACCGTTTCCT GGCCATGATG
AGCCACGAAA TACGCACGCC CATGAACGGT GTGCTGGGAC TGGTCGAACT GCTGCAGCAG
ACCAAGCTCG AAGGCGAGCA GAAGCAGATG GTCTCGTTGG TGCAGGATTC GGGGCGCGCG
CTGCTGCATA TCCTCGATGA CATCCTGGAC TACGCAAAGA TCGAGGCCGG CCGCCTGGAT
ATTTCTCCGA CGGCCACGGA CCTGCGCGCA GTCTTTGACG GCACCGTCGG CCTGCTGGCA
AGCCGCGCAC ACGAGAAATC CCTCACCGTG CACGTGGATG TGGCTGCAGA CGTACCGGCC
AGCGTCTCGG TCGACAGCAT TCGCCTGCGG CAGATCCTGT TCAACTTGCT CTCCAACGCC
ATCAAGTTCA CCGACACCGG CAGCGTGCGA CTTTCGGCGC AATGCACGTA TGCCGCCGAC
GACACGGCGC ACCTCGCCAT CTGCGTCTCC GATACGGGCA TCGGCATCTC GGCGGAGGTG
CAGGCTACGC TGTTCGCGCC GTTCGTGCAG GCCGAGCGCT CGACCACGCG GCGCTACGGC
GGCACCGGCC TGGGCCTGGC CATCTCCCGC CAGCTTGCGG GTCTGATGGG CGGCAAGCTC
GTCATGGAAA GTGCCCAAGG GCAAGGCACC GCCGTGACGC TGGAACTGAC CGTGCCAATG
CTCAAGGCGC GGTATGCGCT GCCGCAACTG GAAGGCCGCA GCGTTGCCAT TACCGTGGAT
GACGCGGCCG TGCGGCACAG CCTCACGCAG CTGGCGGTCG CGGCCGGGCT CCGGCCTGTG
GTTGCTGCAG ACGCCGACAT CCTATTGACC ACCACGGCGC CTGCACGCGA GCACGCCATC
CGCATTACCT CCGAAGCCAG CTATGCCGAA CCGGGCAACG TGCTGAGCAT CAATCCGCTG
AACTGGCACG CTTTCGTGCA GGCGTGCGAG CGCGCGCTCC CGCAATATCA ACACGTGCAA
GCGGCCAGCA TGGCGGTACA CACGCTTCCC GCCGCCGCGC CCACTGAATT GCCCGGTGCG
CACATCCTCG TGGCGGAAGA CCATCCGATC AACCGCGAAC TGATCGCCAA ACAACTCCGG
CTGCTGGGTT ATCGGGTCAC GCTGGCCGAA GATGGCGTGG TCGCGCTCGA GCGCCTGCAC
GAACACCGTT TCGACGCGTT GCTCACCGAT TGCCACATGC CGCGCATGGA CGGCTTCGAT
CTCGCGCGGC ATATCCGCCA GGAAGAAGGC GACGGCCCTC GCCTGCCTAT CATCGCCATC
ACGGCAACAA CGCTGGCCGA GGAGCACGCG CGCTGCCGCG CCGTGGGCAT GGACGCGAGC
CTGCTGAAAC CGACCACGCT CGCCACGCTG CAGGAAGCGC TATCTGCGCT GTGCACCGGT
GACGTTCCCG CAGGCGCCGG CGGGGCCGCG GAGGAGCCGC CCACCCTCTC GCTCGACGAC
CTGCACGCCG CGCTCGGGAC GGACCCCGCA GCCATCGGTT TGGCGCAGGT CTTCCTCTCG
TCGCTGGCCG ATGACGCCCA GCGCCTCCAG CCGCTGCTGG ACGCGATGGA CCGTGCAGCG
CTGCGCCGTT GGGCTCATCG CACCGGTGGT GCCCTCGCGC TGTTGCATAA CCCGGGCGTG
GACGCCGTAG CCGAAGCGTT CCGCCATGCC GTGCATAACG GCAGTGCGAA CGCCATCCGC
GCAGCCGGCG CGCGCACGAT GAGGCTTTTG ACGCATATCA ACGGACTACT CAGCGCCTTC
GGATCCCCCG CCGCCGACGT TGTGCACCGC ACGCAAGTGA CGGATTCATA A
 
Protein sequence
MRRALFAVSA VVCAAILVWW GGDGARQADT GDAGQGPVYR LARFPPMLIV GVIGNAMMPL 
EGIEADRLSG FSGDLLMQLI PHDQVRVVPR VFARRDELLK AACRGDVDII MSVAPRSQYD
HCLEYSAPYL ERPTAVVART ENVEIAQNPF GAGVRVAVEQ GSSLEEELAH EYPNIVLVST
PTAADALDAV LDKTVDVYVG VTYPTRELIA RPRYRELSIV QLANQQVDAL HFAAPRDRAT
LIRHLDRHLA QLPDTTMSQL RARWIAQGGT STVALQLSDD ERAMLASLPP LRYAADPDYM
PYTFDDTGGG LLGIFPEYQN FLSRTLGLQF ERVAVRDWAD ALDKAANGEV DILLGMSDQD
ARPAGFALTQ PIDATPLVIV GRNDALTVAA LSELSGKTVA LPASDTLTAI LRHNVPKIRL
VSAGSVDNAL SMVASGKADF TIVNLPVADA LIRHHFPGEL KVTGSANTIE SIGVGVSARY
AALVPLINRA LFAMPEGEQV SIRNKWLSVS YQLGPSASAV LGKFGPVAAL VLAALVALFI
KQMQLRRENH QRRRAEETLA QQLSFQRALM EAVPFPLVAK DAAQRYVAVN AAFCNMFGQP
RASLLGRTPQ ELGLYSVSNT SPLSDINQRA AQISESTREE LIIDTPDGQS RNVLYWIEPF
HLPDGQPAGT VASLVDISEI RDAQARAERL EQRLREVTES LPALVYQFEL PPGEVQGRIT
YVAGKAHDTL GVEPQDLLRY LSTPELLIFQ DDRQRVLESV LASARELTPL DLQFRHVSPD
GSVRWLHARS IPHREADGRT VWNGYLSDVT TEREQADALE AAKNAAESAL HAKDRFLAMM
SHEIRTPMNG VLGLVELLQQ TKLEGEQKQM VSLVQDSGRA LLHILDDILD YAKIEAGRLD
ISPTATDLRA VFDGTVGLLA SRAHEKSLTV HVDVAADVPA SVSVDSIRLR QILFNLLSNA
IKFTDTGSVR LSAQCTYAAD DTAHLAICVS DTGIGISAEV QATLFAPFVQ AERSTTRRYG
GTGLGLAISR QLAGLMGGKL VMESAQGQGT AVTLELTVPM LKARYALPQL EGRSVAITVD
DAAVRHSLTQ LAVAAGLRPV VAADADILLT TTAPAREHAI RITSEASYAE PGNVLSINPL
NWHAFVQACE RALPQYQHVQ AASMAVHTLP AAAPTELPGA HILVAEDHPI NRELIAKQLR
LLGYRVTLAE DGVVALERLH EHRFDALLTD CHMPRMDGFD LARHIRQEEG DGPRLPIIAI
TATTLAEEHA RCRAVGMDAS LLKPTTLATL QEALSALCTG DVPAGAGGAA EEPPTLSLDD
LHAALGTDPA AIGLAQVFLS SLADDAQRLQ PLLDAMDRAA LRRWAHRTGG ALALLHNPGV
DAVAEAFRHA VHNGSANAIR AAGARTMRLL THINGLLSAF GSPAADVVHR TQVTDS