Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3011 |
Symbol | |
ID | 8020693 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 3176277 |
End bp | 3180587 |
Gene Length | 4311 bp |
Protein Length | 1436 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644831807 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_002982952 |
Protein GI | 241664592 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.701044 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGGCGTG CCCTCTTCGC GGTTTCCGCC GTCGTCTGTG CGGCCATCCT CGTTTGGTGG GGCGGGGACG GCGCACGGCA AGCCGATACC GGCGACGCTG GGCAGGGGCC GGTGTATCGA TTAGCCCGCT TTCCGCCGAT GCTCATCGTG GGCGTCATCG GCAACGCGAT GATGCCGCTG GAGGGCATTG AGGCGGACCG GCTCAGCGGT TTCTCCGGGG ATCTCCTCAT GCAGCTGATC CCGCACGATC AAGTGCGCGT GGTACCGCGC GTATTCGCAC GGCGCGACGA ACTGCTCAAG GCAGCATGTC GCGGCGATGT CGACATCATC ATGAGCGTCG CGCCACGCTC CCAATACGAC CACTGCCTGG AGTATTCGGC ACCGTATCTC GAACGCCCCA CCGCGGTGGT CGCGCGCACG GAAAACGTCG AAATAGCGCA GAACCCGTTC GGGGCGGGCG TTCGCGTTGC GGTCGAGCAA GGCTCTTCAC TGGAGGAAGA GCTGGCCCAT GAATACCCGA ACATCGTGCT GGTGAGCACG CCCACGGCAG CAGACGCTCT GGATGCCGTG CTCGACAAGA CGGTCGACGT CTACGTTGGC GTCACCTACC CGACACGGGA ATTGATAGCC CGGCCGCGCT ACCGGGAGCT ATCGATCGTG CAGCTTGCAA ACCAGCAGGT CGATGCGCTC CATTTCGCCG CGCCCCGGGA TCGCGCGACG CTGATTCGCC ATCTGGATCG CCATCTCGCG CAGTTGCCTG ACACCACGAT GAGCCAACTT CGCGCGCGCT GGATCGCTCA GGGCGGTACG TCGACCGTGG CGCTGCAATT GTCGGACGAT GAGCGCGCCA TGCTGGCATC GCTGCCCCCG TTGCGGTATG CAGCCGACCC GGATTACATG CCGTACACCT TTGACGACAC TGGCGGCGGC CTGCTCGGCA TCTTCCCGGA GTACCAGAAT TTCCTTTCGC GAACGCTGGG CCTGCAGTTC GAGCGCGTCG CCGTGCGCGA CTGGGCCGAC GCGCTCGACA AGGCGGCCAA TGGCGAGGTC GACATCTTGC TCGGCATGTC AGATCAGGAT GCTCGCCCAG CTGGATTTGC GCTCACGCAG CCCATCGACG CCACGCCGCT GGTTATCGTC GGGCGCAACG ATGCGTTGAC TGTGGCGGCG TTGTCCGAGC TTTCCGGCAA GACGGTCGCA CTGCCTGCCA GCGATACGCT GACCGCGATC TTGCGCCACA ACGTGCCGAA AATCCGCCTC GTGTCGGCGG GTTCGGTCGA CAACGCGCTG TCCATGGTGG CAAGCGGCAA AGCCGATTTC ACCATTGTCA ATCTGCCGGT GGCCGACGCG TTGATCCGCC ACCATTTTCC GGGCGAACTG AAGGTCACGG GCTCGGCCAA CACGATTGAG AGCATCGGCG TGGGCGTGTC GGCGCGGTAC GCCGCGCTGG TGCCGCTTAT CAACCGCGCG CTTTTTGCCA TGCCCGAAGG CGAGCAGGTC AGCATCCGCA ACAAGTGGCT GTCGGTCAGC TATCAGCTCG GTCCTTCGGC GTCGGCCGTG CTCGGCAAGT TTGGGCCGGT GGCCGCGCTG GTGCTGGCGG CACTGGTGGC GCTCTTCATC AAGCAGATGC AACTGCGCCG CGAGAATCAT CAGCGCCGCC GCGCTGAAGA AACCCTGGCC CAACAACTGA GCTTTCAGCG CGCGCTGATG GAGGCCGTGC CGTTCCCGCT CGTCGCCAAA GACGCCGCGC AGCGTTACGT TGCCGTAAAT GCAGCCTTCT GCAACATGTT TGGCCAACCC CGCGCTTCGT TGCTGGGGCG CACGCCGCAG GAGCTCGGAC TGTATTCGGT CAGCAACACG TCGCCGCTGT CTGATATCAA CCAGCGCGCC GCGCAGATCA GCGAAAGCAC GCGCGAAGAA CTCATCATCG ACACGCCGGA CGGGCAATCG CGCAACGTGC TGTACTGGAT CGAGCCGTTC CATCTGCCGG ACGGGCAACC CGCGGGCACC GTCGCCTCGC TGGTCGACAT CAGCGAGATT CGCGACGCGC AGGCCCGCGC GGAACGCCTC GAACAGCGCC TGCGCGAAGT CACCGAATCG CTGCCCGCGT TGGTCTACCA GTTTGAGCTG CCACCGGGCG AGGTGCAGGG ACGCATCACC TACGTGGCTG GCAAGGCGCA CGACACGCTG GGCGTCGAGC CGCAGGATTT GCTGCGGTAC CTGTCCACGC CCGAACTGCT TATTTTTCAG GACGACCGGC AGCGGGTTCT GGAAAGCGTG CTGGCCTCCG CGCGAGAGTT GACGCCACTC GACCTGCAAT TCCGCCACGT CAGCCCGGAC GGTTCGGTGC GCTGGCTTCA TGCACGCTCG ATTCCGCACC GCGAGGCGGA CGGCCGCACG GTCTGGAACG GCTACCTGAG CGATGTCACC ACCGAGCGCG AGCAGGCCGA CGCGTTGGAG GCGGCCAAGA ACGCAGCGGA ATCGGCGCTG CATGCCAAGG ACCGTTTCCT GGCCATGATG AGCCACGAAA TACGCACGCC CATGAACGGT GTGCTGGGAC TGGTCGAACT GCTGCAGCAG ACCAAGCTCG AAGGCGAGCA GAAGCAGATG GTCTCGTTGG TGCAGGATTC GGGGCGCGCG CTGCTGCATA TCCTCGATGA CATCCTGGAC TACGCAAAGA TCGAGGCCGG CCGCCTGGAT ATTTCTCCGA CGGCCACGGA CCTGCGCGCA GTCTTTGACG GCACCGTCGG CCTGCTGGCA AGCCGCGCAC ACGAGAAATC CCTCACCGTG CACGTGGATG TGGCTGCAGA CGTACCGGCC AGCGTCTCGG TCGACAGCAT TCGCCTGCGG CAGATCCTGT TCAACTTGCT CTCCAACGCC ATCAAGTTCA CCGACACCGG CAGCGTGCGA CTTTCGGCGC AATGCACGTA TGCCGCCGAC GACACGGCGC ACCTCGCCAT CTGCGTCTCC GATACGGGCA TCGGCATCTC GGCGGAGGTG CAGGCTACGC TGTTCGCGCC GTTCGTGCAG GCCGAGCGCT CGACCACGCG GCGCTACGGC GGCACCGGCC TGGGCCTGGC CATCTCCCGC CAGCTTGCGG GTCTGATGGG CGGCAAGCTC GTCATGGAAA GTGCCCAAGG GCAAGGCACC GCCGTGACGC TGGAACTGAC CGTGCCAATG CTCAAGGCGC GGTATGCGCT GCCGCAACTG GAAGGCCGCA GCGTTGCCAT TACCGTGGAT GACGCGGCCG TGCGGCACAG CCTCACGCAG CTGGCGGTCG CGGCCGGGCT CCGGCCTGTG GTTGCTGCAG ACGCCGACAT CCTATTGACC ACCACGGCGC CTGCACGCGA GCACGCCATC CGCATTACCT CCGAAGCCAG CTATGCCGAA CCGGGCAACG TGCTGAGCAT CAATCCGCTG AACTGGCACG CTTTCGTGCA GGCGTGCGAG CGCGCGCTCC CGCAATATCA ACACGTGCAA GCGGCCAGCA TGGCGGTACA CACGCTTCCC GCCGCCGCGC CCACTGAATT GCCCGGTGCG CACATCCTCG TGGCGGAAGA CCATCCGATC AACCGCGAAC TGATCGCCAA ACAACTCCGG CTGCTGGGTT ATCGGGTCAC GCTGGCCGAA GATGGCGTGG TCGCGCTCGA GCGCCTGCAC GAACACCGTT TCGACGCGTT GCTCACCGAT TGCCACATGC CGCGCATGGA CGGCTTCGAT CTCGCGCGGC ATATCCGCCA GGAAGAAGGC GACGGCCCTC GCCTGCCTAT CATCGCCATC ACGGCAACAA CGCTGGCCGA GGAGCACGCG CGCTGCCGCG CCGTGGGCAT GGACGCGAGC CTGCTGAAAC CGACCACGCT CGCCACGCTG CAGGAAGCGC TATCTGCGCT GTGCACCGGT GACGTTCCCG CAGGCGCCGG CGGGGCCGCG GAGGAGCCGC CCACCCTCTC GCTCGACGAC CTGCACGCCG CGCTCGGGAC GGACCCCGCA GCCATCGGTT TGGCGCAGGT CTTCCTCTCG TCGCTGGCCG ATGACGCCCA GCGCCTCCAG CCGCTGCTGG ACGCGATGGA CCGTGCAGCG CTGCGCCGTT GGGCTCATCG CACCGGTGGT GCCCTCGCGC TGTTGCATAA CCCGGGCGTG GACGCCGTAG CCGAAGCGTT CCGCCATGCC GTGCATAACG GCAGTGCGAA CGCCATCCGC GCAGCCGGCG CGCGCACGAT GAGGCTTTTG ACGCATATCA ACGGACTACT CAGCGCCTTC GGATCCCCCG CCGCCGACGT TGTGCACCGC ACGCAAGTGA CGGATTCATA A
|
Protein sequence | MRRALFAVSA VVCAAILVWW GGDGARQADT GDAGQGPVYR LARFPPMLIV GVIGNAMMPL EGIEADRLSG FSGDLLMQLI PHDQVRVVPR VFARRDELLK AACRGDVDII MSVAPRSQYD HCLEYSAPYL ERPTAVVART ENVEIAQNPF GAGVRVAVEQ GSSLEEELAH EYPNIVLVST PTAADALDAV LDKTVDVYVG VTYPTRELIA RPRYRELSIV QLANQQVDAL HFAAPRDRAT LIRHLDRHLA QLPDTTMSQL RARWIAQGGT STVALQLSDD ERAMLASLPP LRYAADPDYM PYTFDDTGGG LLGIFPEYQN FLSRTLGLQF ERVAVRDWAD ALDKAANGEV DILLGMSDQD ARPAGFALTQ PIDATPLVIV GRNDALTVAA LSELSGKTVA LPASDTLTAI LRHNVPKIRL VSAGSVDNAL SMVASGKADF TIVNLPVADA LIRHHFPGEL KVTGSANTIE SIGVGVSARY AALVPLINRA LFAMPEGEQV SIRNKWLSVS YQLGPSASAV LGKFGPVAAL VLAALVALFI KQMQLRRENH QRRRAEETLA QQLSFQRALM EAVPFPLVAK DAAQRYVAVN AAFCNMFGQP RASLLGRTPQ ELGLYSVSNT SPLSDINQRA AQISESTREE LIIDTPDGQS RNVLYWIEPF HLPDGQPAGT VASLVDISEI RDAQARAERL EQRLREVTES LPALVYQFEL PPGEVQGRIT YVAGKAHDTL GVEPQDLLRY LSTPELLIFQ DDRQRVLESV LASARELTPL DLQFRHVSPD GSVRWLHARS IPHREADGRT VWNGYLSDVT TEREQADALE AAKNAAESAL HAKDRFLAMM SHEIRTPMNG VLGLVELLQQ TKLEGEQKQM VSLVQDSGRA LLHILDDILD YAKIEAGRLD ISPTATDLRA VFDGTVGLLA SRAHEKSLTV HVDVAADVPA SVSVDSIRLR QILFNLLSNA IKFTDTGSVR LSAQCTYAAD DTAHLAICVS DTGIGISAEV QATLFAPFVQ AERSTTRRYG GTGLGLAISR QLAGLMGGKL VMESAQGQGT AVTLELTVPM LKARYALPQL EGRSVAITVD DAAVRHSLTQ LAVAAGLRPV VAADADILLT TTAPAREHAI RITSEASYAE PGNVLSINPL NWHAFVQACE RALPQYQHVQ AASMAVHTLP AAAPTELPGA HILVAEDHPI NRELIAKQLR LLGYRVTLAE DGVVALERLH EHRFDALLTD CHMPRMDGFD LARHIRQEEG DGPRLPIIAI TATTLAEEHA RCRAVGMDAS LLKPTTLATL QEALSALCTG DVPAGAGGAA EEPPTLSLDD LHAALGTDPA AIGLAQVFLS SLADDAQRLQ PLLDAMDRAA LRRWAHRTGG ALALLHNPGV DAVAEAFRHA VHNGSANAIR AAGARTMRLL THINGLLSAF GSPAADVVHR TQVTDS
|
| |