Gene Rpic12D_2958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_2958 
Symbol 
ID8020630 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp3104214 
End bp3106124 
Gene Length1911 bp 
Protein Length636 aa 
Translation table11 
GC content68% 
IMG OID644831745 
ProductATP-dependent DNA helicase RecQ 
Protein accessionYP_002982900 
Protein GI241664540 
COG category[L] Replication, recombination and repair 
COG ID[COG0514] Superfamily II DNA helicase 
TIGRFAM ID[TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00217223 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTACGACT CCCCCGCCAT AGACCACGCG CTGCAGGCGC TGCCCGAAGA CACCGCCGCC 
GCCACGCATG CGGTGCTGCA CGATGTGTTC GGCTACAGCG CATTCCGCGG CCCGCAGGCG
GAGATCGTCG CGCACGTCGC CGACGGCGGC GATTGCCTGG TGCTGATGCC CACCGGCGGC
GGCAAATCGC TTTGCTATCA GATACCTGCA CTCGTGCGGC ACCGGCGTGG GCAGGGCGCC
GGCATTGTGG TTTCGCCGCT GATCGCGTTG ATGCAGGACC AGGTGGCCGC GCTTGAAGAA
GCCGGCGTGC GCGCCGCGTA CCTCAACTCC GCGCTGACAG GCGCTGAGGC CGCGCAGGTC
GAGCGCGATC TGGCGGCGGG CCGGCTGGAC CTCGTCTACG TGGCGCCCGA GCGGTTGATG
ACGCCGCGCT TCCTCGAGCT GCTTGAGCGA TCGCGCATCG GCCTGTTCGC CATCGACGAA
GCGCACTGCG TGTCGCAGTG GGGGCACGAT TTCCGGCCGG AGTACATCCA GCTTTCCGTG
CTGCACGAGC GTTTCCCGCA CGTGCCTCGC ATTGCGCTGA CCGCCACGGC CGACGCCGTC
ACGCGCGACG AAATCGTCGA GCGGCTGGCG CTGACGGACG CGCGCGTCTT CCTCTCGAGC
TTCGACCGCC CGAACATCCG CTACACCATC GTCGAGAAGG ACAGCGCGCG GCAGCAGCTG
CTGCGCTTCA TCCGGGCCGA GCACATGGAC GGCGACACCT GCGACGCCGG CATCGTCTAT
TGCCTGTCGC GCAAGAAGGT GGAAGAGACC GCGCAGTGGC TGGCCGAGCA GGGCATCCGC
GCGCTGCCGT ATCACGCAGG GATGGACTCC CAAGTGCGTG CCCGCCATCA GGCGATCTTC
CGCAAGGAGG AGGGCGTCGT GATGGTGGCG ACCATCGCTT TCGGCATGGG CATCGACAAG
CCGGACGTCC GCTTCGTTGC GCACCTCGAT TTGCCCAAGA GCCTGGAGGG TTACTACCAG
GAGACCGGCC GCGCGGGCCG CGACGGCCTG CCCGCCAACG CATGGATGGC CTACGGCCTG
GCCGACGTGG TGCAGCAGCG CCGCATGATC GACGAGTCCG ATGCGGACGA CGTGCACAAG
CGCGTCTCCA CCGCCAAGCT CGAAGCGCTG CTCGGCCTGT GCGAAGCCGC AACCTGCCGC
CGCGTGGCGC TGCTTGCGTA CTTCGGGGAA AGCAGCCAGC CCTGCGGCAA CTGCGATACG
TGCCTCACGC CGCCGCAAAC CTGGGATGCC ACGCGCGAGG CGCAGATGGC GCTGTCGTGT
GCATACCGCG TGCAGCAGGC GAGCCGCGTG ACCTTTGGCG CCGGCCAGCT CATCGATATC
CTGCGCGGCA ACGCAACGGA GCGCGTCAAA CAGTGGCACC ACGAAACGCT CTCTACCTTC
GGCATCGGCA GCGATCTGTC CGAAGCCGCG TGGCGCAGCG TGTTCCGACA ACTGGTCGCG
CAAGGCCTCT TTGCGGTGGA CCACGGCGGC CATGGCGCGC TGATCCTGAC CGACGCGGCG
CGCCCCGTGC TCAAGGGCGC GCAATCGGTG ATCCTGCGTC GTCAGGCCGA GAAGGTGCGT
GGCGCGTCAT CGTCGACGAA GAAGGAGCGT CGCGCCGATC CGGCCGCCGA GCTTTCTACC
GAAGCGCAGG TGCGCTGGCA GGCGTTGCGT GCCTGGCGGA CGCAGGCTGC GCGCGAGCAC
AGCGTGCCTG CGTATGTGAT CTTCCACGAC GCCACGCTGG CGCGCATTGC CGAGACCGAT
CCCGACTCGC GTGAAGCGCT GGGCGAGCTT CCCGGTATCG GCATGGCCAA GTTGGACCGC
TACGGCCAGG CGCTGCTCGA CGTACTGGAG AAGTGCCGCG AGCAAGCCTA G
 
Protein sequence
MYDSPAIDHA LQALPEDTAA ATHAVLHDVF GYSAFRGPQA EIVAHVADGG DCLVLMPTGG 
GKSLCYQIPA LVRHRRGQGA GIVVSPLIAL MQDQVAALEE AGVRAAYLNS ALTGAEAAQV
ERDLAAGRLD LVYVAPERLM TPRFLELLER SRIGLFAIDE AHCVSQWGHD FRPEYIQLSV
LHERFPHVPR IALTATADAV TRDEIVERLA LTDARVFLSS FDRPNIRYTI VEKDSARQQL
LRFIRAEHMD GDTCDAGIVY CLSRKKVEET AQWLAEQGIR ALPYHAGMDS QVRARHQAIF
RKEEGVVMVA TIAFGMGIDK PDVRFVAHLD LPKSLEGYYQ ETGRAGRDGL PANAWMAYGL
ADVVQQRRMI DESDADDVHK RVSTAKLEAL LGLCEAATCR RVALLAYFGE SSQPCGNCDT
CLTPPQTWDA TREAQMALSC AYRVQQASRV TFGAGQLIDI LRGNATERVK QWHHETLSTF
GIGSDLSEAA WRSVFRQLVA QGLFAVDHGG HGALILTDAA RPVLKGAQSV ILRRQAEKVR
GASSSTKKER RADPAAELST EAQVRWQALR AWRTQAAREH SVPAYVIFHD ATLARIAETD
PDSREALGEL PGIGMAKLDR YGQALLDVLE KCREQA