Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_2958 |
Symbol | |
ID | 8020630 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 3104214 |
End bp | 3106124 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644831745 |
Product | ATP-dependent DNA helicase RecQ |
Protein accession | YP_002982900 |
Protein GI | 241664540 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family [TIGR01389] ATP-dependent DNA helicase RecQ |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00217223 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTACGACT CCCCCGCCAT AGACCACGCG CTGCAGGCGC TGCCCGAAGA CACCGCCGCC GCCACGCATG CGGTGCTGCA CGATGTGTTC GGCTACAGCG CATTCCGCGG CCCGCAGGCG GAGATCGTCG CGCACGTCGC CGACGGCGGC GATTGCCTGG TGCTGATGCC CACCGGCGGC GGCAAATCGC TTTGCTATCA GATACCTGCA CTCGTGCGGC ACCGGCGTGG GCAGGGCGCC GGCATTGTGG TTTCGCCGCT GATCGCGTTG ATGCAGGACC AGGTGGCCGC GCTTGAAGAA GCCGGCGTGC GCGCCGCGTA CCTCAACTCC GCGCTGACAG GCGCTGAGGC CGCGCAGGTC GAGCGCGATC TGGCGGCGGG CCGGCTGGAC CTCGTCTACG TGGCGCCCGA GCGGTTGATG ACGCCGCGCT TCCTCGAGCT GCTTGAGCGA TCGCGCATCG GCCTGTTCGC CATCGACGAA GCGCACTGCG TGTCGCAGTG GGGGCACGAT TTCCGGCCGG AGTACATCCA GCTTTCCGTG CTGCACGAGC GTTTCCCGCA CGTGCCTCGC ATTGCGCTGA CCGCCACGGC CGACGCCGTC ACGCGCGACG AAATCGTCGA GCGGCTGGCG CTGACGGACG CGCGCGTCTT CCTCTCGAGC TTCGACCGCC CGAACATCCG CTACACCATC GTCGAGAAGG ACAGCGCGCG GCAGCAGCTG CTGCGCTTCA TCCGGGCCGA GCACATGGAC GGCGACACCT GCGACGCCGG CATCGTCTAT TGCCTGTCGC GCAAGAAGGT GGAAGAGACC GCGCAGTGGC TGGCCGAGCA GGGCATCCGC GCGCTGCCGT ATCACGCAGG GATGGACTCC CAAGTGCGTG CCCGCCATCA GGCGATCTTC CGCAAGGAGG AGGGCGTCGT GATGGTGGCG ACCATCGCTT TCGGCATGGG CATCGACAAG CCGGACGTCC GCTTCGTTGC GCACCTCGAT TTGCCCAAGA GCCTGGAGGG TTACTACCAG GAGACCGGCC GCGCGGGCCG CGACGGCCTG CCCGCCAACG CATGGATGGC CTACGGCCTG GCCGACGTGG TGCAGCAGCG CCGCATGATC GACGAGTCCG ATGCGGACGA CGTGCACAAG CGCGTCTCCA CCGCCAAGCT CGAAGCGCTG CTCGGCCTGT GCGAAGCCGC AACCTGCCGC CGCGTGGCGC TGCTTGCGTA CTTCGGGGAA AGCAGCCAGC CCTGCGGCAA CTGCGATACG TGCCTCACGC CGCCGCAAAC CTGGGATGCC ACGCGCGAGG CGCAGATGGC GCTGTCGTGT GCATACCGCG TGCAGCAGGC GAGCCGCGTG ACCTTTGGCG CCGGCCAGCT CATCGATATC CTGCGCGGCA ACGCAACGGA GCGCGTCAAA CAGTGGCACC ACGAAACGCT CTCTACCTTC GGCATCGGCA GCGATCTGTC CGAAGCCGCG TGGCGCAGCG TGTTCCGACA ACTGGTCGCG CAAGGCCTCT TTGCGGTGGA CCACGGCGGC CATGGCGCGC TGATCCTGAC CGACGCGGCG CGCCCCGTGC TCAAGGGCGC GCAATCGGTG ATCCTGCGTC GTCAGGCCGA GAAGGTGCGT GGCGCGTCAT CGTCGACGAA GAAGGAGCGT CGCGCCGATC CGGCCGCCGA GCTTTCTACC GAAGCGCAGG TGCGCTGGCA GGCGTTGCGT GCCTGGCGGA CGCAGGCTGC GCGCGAGCAC AGCGTGCCTG CGTATGTGAT CTTCCACGAC GCCACGCTGG CGCGCATTGC CGAGACCGAT CCCGACTCGC GTGAAGCGCT GGGCGAGCTT CCCGGTATCG GCATGGCCAA GTTGGACCGC TACGGCCAGG CGCTGCTCGA CGTACTGGAG AAGTGCCGCG AGCAAGCCTA G
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Protein sequence | MYDSPAIDHA LQALPEDTAA ATHAVLHDVF GYSAFRGPQA EIVAHVADGG DCLVLMPTGG GKSLCYQIPA LVRHRRGQGA GIVVSPLIAL MQDQVAALEE AGVRAAYLNS ALTGAEAAQV ERDLAAGRLD LVYVAPERLM TPRFLELLER SRIGLFAIDE AHCVSQWGHD FRPEYIQLSV LHERFPHVPR IALTATADAV TRDEIVERLA LTDARVFLSS FDRPNIRYTI VEKDSARQQL LRFIRAEHMD GDTCDAGIVY CLSRKKVEET AQWLAEQGIR ALPYHAGMDS QVRARHQAIF RKEEGVVMVA TIAFGMGIDK PDVRFVAHLD LPKSLEGYYQ ETGRAGRDGL PANAWMAYGL ADVVQQRRMI DESDADDVHK RVSTAKLEAL LGLCEAATCR RVALLAYFGE SSQPCGNCDT CLTPPQTWDA TREAQMALSC AYRVQQASRV TFGAGQLIDI LRGNATERVK QWHHETLSTF GIGSDLSEAA WRSVFRQLVA QGLFAVDHGG HGALILTDAA RPVLKGAQSV ILRRQAEKVR GASSSTKKER RADPAAELST EAQVRWQALR AWRTQAAREH SVPAYVIFHD ATLARIAETD PDSREALGEL PGIGMAKLDR YGQALLDVLE KCREQA
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