| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2739 |
|---|
| Symbol | |
|---|
| ID | 8020404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2892500 |
|---|
| End bp | 2894209 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644831520 |
|---|
| Product | Long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_002982682 |
|---|
| Protein GI | 241664322 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGC CGTGGCTGAA GCAATATCCC GCCGGGGTGC CGGCCGAGAT CGATGCATCG
CAGTATCGAT CGCTGGCCCA TCTGCTTGAG GATTCCTTCC AGAAGAACCG TAACCGCCGT
GCATTTGAAT GCATGGGAAA GGTGCTGACC TACGGCGAGC TGGATACGCT TTCGCGCCAA
CTGGCGGCGT GGCTGCAATC GCGCGGTCTG GCGCTTGGCG CGCGCGTCGC GTTGATGATG
CCGAACGTGT TGCAGTACCC CGTGGCGCTG GCCGCCGTGC TGCGTGCCGG CTATGTGGTC
GTCAACGTCA ATCCGCTTTA CACCCCGCGC GAACTGGAAC ACCAGCTCAA GGACAGCGGC
GCCGAAGCCA TCATCATCCT TGAGAATTTC GCGACGACGC TGCAGCAGGT GCTGCCCAAT
ACGCCGGTCA AACACATCGT GGTGGCCAGC ATGGGCGACT TGCTGGGCGG GCTGAAGGGC
ATGCTGGTCA ATTTCGTCGT GCGCAGCGTC AAGAAGATGG TGCCGGCGTG GGAACTGCCC
AACTGCATCC GCTTCAACAC CGCGCTGGAA GAAGGCGCCA AGCAGACGCT CAAGCCGACT
TCCGTCGGCC CCGACGACGT GGCCTTCCTG CAATACACGG GCGGCACGAC CGGCGTGTCG
AAGGGTGCGA CGCTGCTGCA TCGGAACATC GTCGCGAACG TGTTGCAATC GGAAGCCTGG
ATGAACCCGG CGCTCACCAA GCCTGGTCGC GATGGCCGCA TGCTGGCCGC CGACGAAGAG
ATCGTCACGA TCACCGCGCT GCCGCTGTAT CACATCTTCG CGCTGACGGT GTGCTGCCTG
CTGTCGATGC GCAAGGGCGG GCTGGCCGTG CTGATCCCGA ATCCGCGGGA CATCCCGGGC
TTCATCAAGG TGCTCAAGCA GTACCGCTTC CACATGTTCC CGGCCGTGAA CACGCTGTAC
AACGCGCTGC TGAACAACCC CGAATTCAAG GATGTGGACT GCTCGAACCT GCGTGTGGCC
AACGGTGGCG GCATGGCGGT GCAGGAGGCC GTGGCCAAGA AGTGGCTCGA GGTGACGGGG
TGCCCGATCA TCGAAGGCTA TGGTCTGTCG GAAACCTCGC CGTCGGCCAT CTGCAACCCC
ACGGATACCG ATAAGTTCTC GGGTACCGTC GGCCTGCCGA TTCCTGGCAC GGAAATCGCC
ATTCGCGACG ACGAAGGCCG CGACTTGCCG ATCGGCCAGC CGGGCGAAAT CTGCATCCGC
GGCCCGCAAG TCATGGCTGG TTACTGGAAG CGCCCGGACG AGACCGCCAA GGTCATGTAC
GCCGACGGCT TCTTCAAGAC CGGCGACGTC GGCGTGATGG ACGAGCGCGG TTACACCAAG
ATCGTCGATC GCAAGAAGGA CATGATTCTG GTGTCGGGCT TCAACGTGTA CCCGAACGAG
ATCGAAGGCG TGGTGGCGAT GTGCCCGGGC GTGCTGGAAG TGGCCGCCGT GGGCGTGCCC
GACGTCCACT CGGGCGAGGT GGTGAAGCTG TTCGTGGTGC GCCGCGACCC GACGCTCACA
GAACAGAAGC TGCAGGAGTT CTGCAAGGAC CAGCTCACCG GTTACAAGCG CCCCAAGTTC
ATCGAGTTCC GCAACGAGCT GCCGAAGACC AACGTCGGCA AGATCCTGCG CCGTGAACTG
CGCGACGAGG CGATGAAGAA GCGTGCCTGA
|
|---|
| Protein sequence | MDKPWLKQYP AGVPAEIDAS QYRSLAHLLE DSFQKNRNRR AFECMGKVLT YGELDTLSRQ
LAAWLQSRGL ALGARVALMM PNVLQYPVAL AAVLRAGYVV VNVNPLYTPR ELEHQLKDSG
AEAIIILENF ATTLQQVLPN TPVKHIVVAS MGDLLGGLKG MLVNFVVRSV KKMVPAWELP
NCIRFNTALE EGAKQTLKPT SVGPDDVAFL QYTGGTTGVS KGATLLHRNI VANVLQSEAW
MNPALTKPGR DGRMLAADEE IVTITALPLY HIFALTVCCL LSMRKGGLAV LIPNPRDIPG
FIKVLKQYRF HMFPAVNTLY NALLNNPEFK DVDCSNLRVA NGGGMAVQEA VAKKWLEVTG
CPIIEGYGLS ETSPSAICNP TDTDKFSGTV GLPIPGTEIA IRDDEGRDLP IGQPGEICIR
GPQVMAGYWK RPDETAKVMY ADGFFKTGDV GVMDERGYTK IVDRKKDMIL VSGFNVYPNE
IEGVVAMCPG VLEVAAVGVP DVHSGEVVKL FVVRRDPTLT EQKLQEFCKD QLTGYKRPKF
IEFRNELPKT NVGKILRREL RDEAMKKRA
|
|---|
| |