Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_2728 |
Symbol | |
ID | 8020393 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 2880683 |
End bp | 2882119 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644831509 |
Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase |
Protein accession | YP_002982671 |
Protein GI | 241664311 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.263474 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCGCTG CGACCGTGAT GATGCACGCC ACCGACGCCG CCGCCTGGAT GGCCGGCGCC CATCTTGCCG GCCCCGATGC AGCCATCCTG CGCGTGACGA CCGACAGCCG CTCCGTGCAG CCCGGCGACC TGTTCGTCGC GCTCATCGGC GAGCGCTTCG ATGCACACGA CTTCCTGCCC GAAGTGGTGG CGCGTGGCGC TGCTGCCGTG CTGGTGTCAC GCCCACCGGC CGCAACGCTG GATATGACCA ACGTGGCCGT GCTGACCGTT GCCGATACGC GCATCGGGCT CGGCCAGCTT GCCGCCGGCT GGCGACGCCA GTTCCCGATT CCCGTCGTCG CCGTGACGGG CAGCAACGGC AAGACCACGG TCAAGGAGAT GATCTCCGCG ATCTTCGCGC AGGCTGTCGG CGAAGATGCC CGCCTGGCGA CCGCCGGCAA CTTCAACAAC GACATCGGCC TGCCGCTCAC GCTGTTCCGC CTGAACGCGC AACACAAGCT CGCCGTGCTT GAACTCGGCA TGAACCATCC GGGCGAAACG GCTGTATTGG CCGCCATTGC CCAGCCGACC GTGGCGATGA TCAACAACGC GCAGCGCGAG CACCAGGAAT TCATGGTCAG CGTGGAAGCG GTGGCTGAAG AACACGCCGC TGTGCTGGCC GCGTTGCCGG CCAATGGCGT GGCGGTGTAT CCGCGCGATG CGGCCAACGG TGGCGAATAT GCGCGGGTGT GGAAAGCCGC GGCGGGCTCG CGGCGCGTGC TCGATTTCGG TATGGATGCC GGGGCCGTGA CGGGCACCGT GGTGGACACC GCCGACGGGC AACGCATTGA AGTGCAGGCT CCGGGCCAGC GTTTCGTCAT CACCTTGCCG CTGCTGGGCC TGCATAACGC ACGCAATGCG CTGGCGGCGA CGGCGTGCGC GCTGGCAGCC GGTGTCGCTC CCGAGGTGAT TGCGCAAGCG CTGGGCAACT TTGCACCCGT CAAGGGGCGG TTGCAGCGCA AGCAGGGCAC GCATGGCGGC CTGGTCATCG ACGACACGTA CAACGCGAAC CCGGATTCGA TGCGCGCCGC GATTGACGCG CTTGTCACGC TGCCCGCGCC GCGCTGGCTG GTGCTGGGTG ACATGGGCGA GGTGGGCTCT AAGGGGCCGG CATTCCACGA AGAGATCGGG GCCTACGCGC GCGCGCGCGG CATCGACGCA GTGCTGGCAA CCGGCGAGCT TGCGCGCCAC ACGGTCGATG CCTTCGGCCC GGGCGCACAG CATTTTGCGT CGGCGGAAGA CTTGATTGAA CACGGTGTGC CCGCCATTGC GCCGGCCGCG ACGGTATTGG TGAAGGGATC GCGCTTCATG CGGATGGAAC GCATTGTGGA AGCGCTGGTC TTGAAAGACC CGGTAGCGGA TTCGCCAGCC GGTTCCAACA CACAACAGCA GCATTAA
|
Protein sequence | MSAATVMMHA TDAAAWMAGA HLAGPDAAIL RVTTDSRSVQ PGDLFVALIG ERFDAHDFLP EVVARGAAAV LVSRPPAATL DMTNVAVLTV ADTRIGLGQL AAGWRRQFPI PVVAVTGSNG KTTVKEMISA IFAQAVGEDA RLATAGNFNN DIGLPLTLFR LNAQHKLAVL ELGMNHPGET AVLAAIAQPT VAMINNAQRE HQEFMVSVEA VAEEHAAVLA ALPANGVAVY PRDAANGGEY ARVWKAAAGS RRVLDFGMDA GAVTGTVVDT ADGQRIEVQA PGQRFVITLP LLGLHNARNA LAATACALAA GVAPEVIAQA LGNFAPVKGR LQRKQGTHGG LVIDDTYNAN PDSMRAAIDA LVTLPAPRWL VLGDMGEVGS KGPAFHEEIG AYARARGIDA VLATGELARH TVDAFGPGAQ HFASAEDLIE HGVPAIAPAA TVLVKGSRFM RMERIVEALV LKDPVADSPA GSNTQQQH
|
| |