| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2722 |
|---|
| Symbol | ddl |
|---|
| ID | 8020387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2873060 |
|---|
| End bp | 2874055 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644831503 |
|---|
| Product | D-alanine--D-alanine ligase |
|---|
| Protein accession | YP_002982665 |
|---|
| Protein GI | 241664305 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCG GTCCGTTTGT TCCCAATCCG ACGATCGATC CGAAGTCCCT CGGCAAGGTG
GGCGTGCTCA TGGGCGGTCG TTCGGCCGAG CGCGAAATCT CGCTGATGTC CGGCAACGGC
GTGCTGGCTG CGCTGCGCGC GCGCGGCGTC GATGCGCACC CGTTCGACCC GGGGCTGCAG
CCCGTGGCCG ATCTGGCCAA GCAAGGGTTC GACCGCGTGG TGATCTCTTT GCACGGCCGC
TTTGGCGAAG ACGGCACGAT CCAGGGCCTA CTGGAGCAAT TCGGCATTCC GTACACCGGC
AGCGGCGTAC TCGCATCTGC GCTGGCGATG GACAAGGAAG CCACCAAGCG CCAATGGCAG
ACCCACGGCC TGCCCACGCC CGATTTCGTG ATGTTGCATG CCGGCGCCGA CTGGCAAGCC
GTGGCCGACC GCCTGGGCCT GCCGCTGATC GTCAAGCCCG CGCGTGAAGG TTCGTCGATC
GGTCTGACCA AGGTCACGAG TGTTGCCGAG CTGCCCGCCG CCTACGAAAA GGCCGCGCGC
CTGGACCGCG ATGTGATGGC CGAGCAGTTC ATCGAAGGCG ACGAGCTGAC CTGCCCGATC
ATCGGCGAAG GCGAAAGCGC AACCGCGCTG CCGCTCATCC GCATCGTCGC GCCGCAGGCC
AACTACGACT ACCAGAACAA GTACTTCACC GACGACACGC GCTACGAATG CCCGGCACCG
ATTGCCGTCG ACGTGGCCGC GCGCGTGCAG GCGCTGGTGG TGCAGGCGTA TCGCGGGCTG
GGCTGCCGCG GCTGGGGTCG TGCCGACATC ATGCTGCGCA AGTCCGACAA CGCGCCGTTC
TTGTTGGAGA TGAACACGTC GCCGGGCATG ACCGGCCATT CGCTGGTGCC GATGGGCGCG
CGCGCCGCAG GCATCAGTTA TGAAGATTTC GTGTTGCAAC TGGCGGCGAG CGCGTCGCTG
GAGCTGCACG CGAGCACCGA CTGGAAACCC GAGTAA
|
|---|
| Protein sequence | MTTGPFVPNP TIDPKSLGKV GVLMGGRSAE REISLMSGNG VLAALRARGV DAHPFDPGLQ
PVADLAKQGF DRVVISLHGR FGEDGTIQGL LEQFGIPYTG SGVLASALAM DKEATKRQWQ
THGLPTPDFV MLHAGADWQA VADRLGLPLI VKPAREGSSI GLTKVTSVAE LPAAYEKAAR
LDRDVMAEQF IEGDELTCPI IGEGESATAL PLIRIVAPQA NYDYQNKYFT DDTRYECPAP
IAVDVAARVQ ALVVQAYRGL GCRGWGRADI MLRKSDNAPF LLEMNTSPGM TGHSLVPMGA
RAAGISYEDF VLQLAASASL ELHASTDWKP E
|
|---|
| |