Gene Rpic12D_2706 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_2706 
Symbol 
ID8020371 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2856311 
End bp2857573 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content59% 
IMG OID644831487 
Producttype II secretion system protein 
Protein accessionYP_002982649 
Protein GI241664289 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1459] Type II secretory pathway, component PulF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCACAC GAGCACCTGC CGCAAACCGC GCTGCCGCGC CGGCACGAAA GACCGCCAAG 
ACCAAGGCGC CCACGCAGTA CATCTTCGAG TGGGAAGGCA AAGATCGGAA AGGCAAGATT
TTCAAGGGCG AGATGCGCGC CGAGAGCATC ACCGAGGTGA ATGCCATCCT GCGCAAGCAA
GGCCTGTCGA TCACCAAATC CAAGCGCCGC CGCGCGGCCC GCGGCAAGAA GATCACGCCG
AAGGACATCG CCTACTTCAC GCGCCAGCTG TCGACCATGC TGAAGGCCGG CGTGCCGCTG
CTGCAGTCGA TCGACATCAT CGCAAAGGGC CACGCCAACC CGAACTTCAC GCAGCTGCTC
ACGGAAATCC GCGTCGATAT TGAATCGGGC AGCAGCATGG CGCAAGCCTT CCGACGTCAC
CCGAAGTACT TCGACACGCT GTACTGCAAC CTGATCGACG CGGGCGAGCA AGGCGGTATT
CTGGATGCGC TGCTCGAGCG GCTTTCGCTG TACATGGAAA AGTCCCTCGC ACTGAAGGCG
CAGATCAAGT CGGCCCTGAT CTACCCGATC TCGGTGCTGA CGGTGGCCTT CCTGGTGACC
GTGGTGCTGA TGATCTTTGT GGTGCCGTCG TTCAAGGGTG TTTTCTCCGG TTTCGGTGCC
GATTTGCCAG CCCCGACGCT GTTCGTCATT GCGATATCGG ATTTCTTCGT CAAGTGGTGG
ATACCAATCG TGCTAGGGCC CATTGCCGGC ATTGCACTGT TTTCGCGTGC ATTCAAGCGA
TCTGAAAACG TCCAGCGTTC GACGCATCGC TTCATCCTGA AGATTCCCAT CTTTGGCGAC
ATCATCCGCA AGGCAACCAT TGCTCGCTGG ACGCGTACGC TGGCTACCAT GTTCGCAGCC
GGTACGCCGC TCGTGGAGTC GATGGAGTCG GTCGCCGGGG CCGCAGGCAA CTGGATCTAC
CATGATGCGA CCCTCGAGGT TCAGCAAGCG GTACGTATCG GCACGAGTCT CACCAACGCC
ATGCAAGCGA CACACGTGTT CGACAACATG GTCCTGCAGA TGACGCAGAT CGGTGAAGAG
TCCGGCGCCC TGGACAACAT GCTGCTGAAG GTGGCGGAGT TCTACGAGCG CGAGGTGGAC
GATGCGGTCG CCAACATCTC GACTCTGATC GAACCCATCA TCATCGTCTT CCTCGGCGTG
CTAATCGGCG GCATGGTGGT GGCGATGTAT CTGCCGATCT TCAAGCTTGG TACGGTGGTC
TGA
 
Protein sequence
MATRAPAANR AAAPARKTAK TKAPTQYIFE WEGKDRKGKI FKGEMRAESI TEVNAILRKQ 
GLSITKSKRR RAARGKKITP KDIAYFTRQL STMLKAGVPL LQSIDIIAKG HANPNFTQLL
TEIRVDIESG SSMAQAFRRH PKYFDTLYCN LIDAGEQGGI LDALLERLSL YMEKSLALKA
QIKSALIYPI SVLTVAFLVT VVLMIFVVPS FKGVFSGFGA DLPAPTLFVI AISDFFVKWW
IPIVLGPIAG IALFSRAFKR SENVQRSTHR FILKIPIFGD IIRKATIARW TRTLATMFAA
GTPLVESMES VAGAAGNWIY HDATLEVQQA VRIGTSLTNA MQATHVFDNM VLQMTQIGEE
SGALDNMLLK VAEFYEREVD DAVANISTLI EPIIIVFLGV LIGGMVVAMY LPIFKLGTVV