| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2705 |
|---|
| Symbol | |
|---|
| ID | 8020370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 2854539 |
|---|
| End bp | 2856266 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644831486 |
|---|
| Product | type IV-A pilus assembly ATPase PilB |
|---|
| Protein accession | YP_002982648 |
|---|
| Protein GI | 241664288 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTCG GACTCGCTCT AGCGCAGAGC CGGCGGATCG CGCCGACGCT ACTTACCCAG
CTTGAACAGA GCGCGCGTGA GAAACGCACC CAACTGATCG ACGAACTGGT GGGCAGCGGG
ATCATGAGTG CGCACGACCT CGCTGTGTTC GTGGCCGGCA AGTACCAGAT GCCGCTGCTG
GACCTGGCAC AGTACAAGCT CGACACCGTG CCGGCCGTGC TGTCGGCCAA CAAGCACTTT
GCCCAGTTGC GCCTGTTGCC GCTGGGCCGT CGCGAGAACC GCCTCATCCT CGCCACGTCC
GACCCGAGCG ATCCGAAGCC GATCGAAGAG CTGCGTCAGA AGATGAACGT GGCCATCGAA
ACGGTCATCG TCGAACACGA CAAGCTGGTT CGCCAACTCA GCCTCGCCAA TGAGGCGCCG
GCCGAGATCA AGTCGCTCTT CCCCAAGCAG GAAGCCACGC AGATCGAATA CGATGCGGGC
GCTGCCGCCG CCACGCGTCG CACCACCCCC GACGGCATCG ACGATGCCCC TGTGGTGCGC
TTCCTGCAGA AGCTCTTTAC CGAAGCCTTG CTGCGCGGCG CATCGGATTT GCATTTCGAG
CCCTTTGAAA CGTTTTACCG CGTGCGTTTC CGCATCGACG GCATCCTCGC GCAGGTCGCG
CAGCCGCCGC TCGATATCCG CGACAAGATC GCGACGCGCA TCAAGGTGCT GTCGCGCCTC
GACATCTCGG AAAAGCGTGT GCCGCAAGAC GGCCGCATGA AGCTGCTGAT CACTGTCCCG
AAAGACCGCA AGGACAAGGA CAACAAAGAG ACGATCGAGC GCGCCATCGA CTTCCGGGTG
TCGACGCTGC CGACGCTGTT CGGCGAAAAG ATCGTGATCC GGATTCTGGA GTCGTCCACC
GAGCGGCTCG ATATCGACCA GCTTGGCTAT GAGCCGGAGC AAAAGCAGTT GCTGCTCGAC
GTCATCAAGC GGCCGTACGG CATGGTGCTC GTGACGGGGC CAACCGGATC GGGCAAAACC
GTGTCGCTGT ACACGTTCCT GAACAGGCTG AACCAGGGCG ACATCAATAT CTCCACCGCC
GAAGACCCAG CGGAAATCCA GTTGCCCGGC ATCAACCAGG TCAACGTGAA CGACAAGGCT
GGGCTGACCT TTGCGGCGGC GCTGAAGTCG TTCCTGCGGC AGGATCCGGA CATCATCATG
GTGGGCGAAA TCCGAGATCT GGAGACGGCC GACATCTCGA TCAAGGCTGC GCAGACCGGT
CACCTGGTGT TTTCCACGCT GCACACCAAC GACGCGCCGA CCACGCTGAC CCGCTTGATG
AACATGGGGG TTGCGCCATT CAACATCGCG TCGTCGGTGC TCTTGATCAC GGCACAGCGG
TTGGCGCGAC GGCTGTGCAA GGAATGCAAG AAGCCCGGTC CGCTGCCCAA GGAAACGCTG
CTCGATGCAG GCTTTACCGA GGCCGACCTA GACGGCTCAT GGCAGCCGTA TCACCCGGTC
GGCTGCGAGA TCTGCAACGG CAGCGGCTAC AAGGGACGGG TCGGCATCTA CCAGGTCATG
CCGATTACCG AAGCGATCCA GGAAATCATT CTCACACACG GCACGGCGCT GCAGATCGCC
GAGCAAGCGC GCAAGGAAGG CGTGCTGTCG CTGCGCGAAT CCGGCTTGCG AAAAGTGAAG
CAGGGGCTGA CTTCCCTCGA GGAAGTGCTG GCCACAACGA ACCAATAA
|
|---|
| Protein sequence | MTLGLALAQS RRIAPTLLTQ LEQSAREKRT QLIDELVGSG IMSAHDLAVF VAGKYQMPLL
DLAQYKLDTV PAVLSANKHF AQLRLLPLGR RENRLILATS DPSDPKPIEE LRQKMNVAIE
TVIVEHDKLV RQLSLANEAP AEIKSLFPKQ EATQIEYDAG AAAATRRTTP DGIDDAPVVR
FLQKLFTEAL LRGASDLHFE PFETFYRVRF RIDGILAQVA QPPLDIRDKI ATRIKVLSRL
DISEKRVPQD GRMKLLITVP KDRKDKDNKE TIERAIDFRV STLPTLFGEK IVIRILESST
ERLDIDQLGY EPEQKQLLLD VIKRPYGMVL VTGPTGSGKT VSLYTFLNRL NQGDINISTA
EDPAEIQLPG INQVNVNDKA GLTFAAALKS FLRQDPDIIM VGEIRDLETA DISIKAAQTG
HLVFSTLHTN DAPTTLTRLM NMGVAPFNIA SSVLLITAQR LARRLCKECK KPGPLPKETL
LDAGFTEADL DGSWQPYHPV GCEICNGSGY KGRVGIYQVM PITEAIQEII LTHGTALQIA
EQARKEGVLS LRESGLRKVK QGLTSLEEVL ATTNQ
|
|---|
| |