Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_2549 |
Symbol | secD |
ID | 8020213 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 2681843 |
End bp | 2683732 |
Gene Length | 1890 bp |
Protein Length | 629 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644831329 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002982492 |
Protein GI | 241664132 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.370381 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.188242 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGCT ATCCGCTCTG GAAATACATT GTGATCCTGG TGGCGCTTGC CATTGGGTTC CTCTATACGC TGCCGAACTT CTTCGGTGAG GCGCCTGCCG TGCAGGTGTC TTCTGGCAAA GCCACCGTCA AAGTCGACCT GAACGTGCAA AAGCAGGTCG AGAGCCTGCT GGCTGCGGCC AGCATTCGAC CCGACGGCGT GTTCTTCGAC AACAACGGCA CCTCCGCCAG CGTGCGCGTG CGTTTTGCCG ACACCGACAC GCAGCTCAAG GCCAAGGACA TCCTGGCCCG CGGCCTGAAC ACCGATCAAG CCGATCCGAC CTACATCGTG GCGCTGAACC TGCTGCCCGG TTCGCCGCGC TGGTTGAGCG GCGCGCCGTT CTTTGCCAAG CCCATGTTCC TGGGTCTCGA TTTGCGCGGT GGCGTGCACT TCCTGCTGCA GGTCGACATG AACGGCGCCG TGACGAAGAA GCTCGACTCG CTTGCCGGCG ACATCCGCAC GCAACTGCGT GACAAGGGCA TTCGACACAG CGGCATCGAT CGCAACGGCA ACACCATCAC GATCAAGTTC AGCACCCCGG ACGACGCCGA CCGCGCCCGC ACGCTGCTGG CCGACTCGAC CCGCGAACTG GCCTACACCG TGGACAAGAG CGCCGACAGC GCCACCCTCA CCGGCACCTT CACCGCGGCT GCGATGAAGG AAGTGCAGGA CAACGCGGTG AAGCAGAACA TCGTCACGCT GCACAACCGG GTCAACGAAC TCGGCGTGGC TGAACCGGTG ATCCAGCAAC AGGGCCCGGA CCGCATCGTC GTGCAGCTGC CCGGCGTGCA GGACACCGCC AAGGCCAAGG ACATCATCGG CCGCACGGCA ACGCTGGAAG CGCGCCTGGC CGATCCGAAC GCGCCGCTCG TGCCGCGTGC CGGCGATCCG GTACCGCTGG GCGACGAGCT GTTCACGCAA GGGCGCAGCG CTCCCGTCCT GCTGCAGAAG CAGGTGATCT TCACAGGCGA TCGCATCACC AGCGCCTCGG CGGGCTTCGA CCAAAACCAC AATTCGTCGG TCGACATTAC GCTCGATGGC CAGGGCGGCC GCATGCTGCG CGATGTCTCG CGTGACAACA TCGGCAAGCG CATGGGCATC GTGCTCTTTG AAAAGGGCAA GGGCGAGGTG CTGACGGTGG CAACCATCCA GTCCGAACTG GGTTCGCGCT TCCAGATCAC CGGCATGGGC TCGACGGAGG CGGCTTCCGA CCTGGCGCTG CTGCTGCGCG CAGGCTCGCT GGCCGCGCCA ATGGAAATCA TCGAAGAACG CACCATCGGC CCATCGCTGG GTGCCGATAA CATCAAGAAA GGCTTCGATT CGGCGCTGTA CGGCTTCCTC GCCATCTCGG TGTTCATGGT GCTGTACTAC ATGCTGTTCG GCGCGTTCTC GGTGGCGGCC CTGGGCGTCA ACGTGTTCCT GCTGATCGCA CTGCTCTCCA TGCTGCAGGC CACGCTCACG CTGCCGGGTA TCGCGGCCAT CGCGCTGGCG CTGGGTATGG CCATTGACGC CAACGTGCTG ATCAACGAGC GCGTGCGTGA AGAGCTGCGC GGCGGCGCAT CCGCGCAGAT GGCCATCGCC GCCGGTTTCG ACCGCGCCTG GGCGACCATC CTCGATTCGA ACGTGACGAC GCTCATTGCC GGCCTGGCGC TGATCGCCTT CGGTTCGGGC CCGGTACGTG GCTTCGCGAT CGTGCACTGC CTGGGGATCG GCACGTCCAT GTTCTCGGCG GTGTTCTTCA ACCGCGGCCT CGTGAACCTC TGGTACGGCC GCAAGAAGAA GCTGCAGAGC GTCGCCATCG GGCAGGTGTG GAAGCCGGGC AATACGAACA CGGAATCGCC CGCCAAGTAA
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Protein sequence | MNRYPLWKYI VILVALAIGF LYTLPNFFGE APAVQVSSGK ATVKVDLNVQ KQVESLLAAA SIRPDGVFFD NNGTSASVRV RFADTDTQLK AKDILARGLN TDQADPTYIV ALNLLPGSPR WLSGAPFFAK PMFLGLDLRG GVHFLLQVDM NGAVTKKLDS LAGDIRTQLR DKGIRHSGID RNGNTITIKF STPDDADRAR TLLADSTREL AYTVDKSADS ATLTGTFTAA AMKEVQDNAV KQNIVTLHNR VNELGVAEPV IQQQGPDRIV VQLPGVQDTA KAKDIIGRTA TLEARLADPN APLVPRAGDP VPLGDELFTQ GRSAPVLLQK QVIFTGDRIT SASAGFDQNH NSSVDITLDG QGGRMLRDVS RDNIGKRMGI VLFEKGKGEV LTVATIQSEL GSRFQITGMG STEAASDLAL LLRAGSLAAP MEIIEERTIG PSLGADNIKK GFDSALYGFL AISVFMVLYY MLFGAFSVAA LGVNVFLLIA LLSMLQATLT LPGIAAIALA LGMAIDANVL INERVREELR GGASAQMAIA AGFDRAWATI LDSNVTTLIA GLALIAFGSG PVRGFAIVHC LGIGTSMFSA VFFNRGLVNL WYGRKKKLQS VAIGQVWKPG NTNTESPAK
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