| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2488 |
|---|
| Symbol | |
|---|
| ID | 8020152 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 2609502 |
|---|
| End bp | 2613782 |
|---|
| Gene Length | 4281 bp |
|---|
| Protein Length | 1426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644831269 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002982432 |
|---|
| Protein GI | 241664072 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3164] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.297377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCGCC CGTCCCAGCC CCCAGAATCG CCGAAGTCCG ATGGTGGACA CGCCAGCACC
CTGTCCACAC GCGGGGTGGG CCGGCCCTCG GCCTGGGCAT GGCTGGTATG GCTCGCCCGC
CGGGTCGGCG CGGGCATCGG CGCTGTTTTC CGCGCCCCGA TCTGGCGCAA GCTGTGGCGG
GTGCTCTGGA AGACGGCCGC CGCGCTGGCC GTCCTGGCCG TCATCGGCAT GCTGGCGGTG
CGCTTCATCT TGTGGCCGCG CGCGAGCGTG GCACGCGAAT GGATGCAGCG CGAGGCGTCC
AGCGCACTGC ACGCCACGGT GGACATCGGC TCGCTTGAGA CCTATTGGGA GGGCTGGCAC
CCGGCATTCC GCGCCCAGCG CATCGACGCG CACGACACCG CGGGCCGCCG CACCTTCGCG
ATACAGGACG TCCAGGCGCG GCTGTCCTGG CGCTCGTTGC TGCGCATGCA GGTGACCTTT
GCCGCCCTGC ACGCTACCCA AGCCGACCTG CTGGTACGGC GCGATACGCA AGGCGTCCTC
TCCGTCGCCG GCATGCAGCT TAGCGCGGAC ACCGGCGGCG ACAGCATCTT CCTCGACCAA
CTGCTCTCCC AAGGCAACAT CGATTTTCAG CAAGGCGCCG TCCGCTGGCT CGACGAGCAG
CAGAAGCTGC CCGAAGTGGC GCTGGGCAAT GTGCGGCTGC AGCTGCGCAG CGGCCCGACG
CGCCACAGGC TGGAGGCCAG CGGCACCTCG CCCACGCTGT TCAACGGCCC CATCAAACTC
CACGCCGATT TCCGCCACGA CCTGCTGGCC CGCCCCGGCG ACTGGCGCCA CTGGCATGGC
CAGGCGTCCT GGCAGGTCGA TACGCTGCAG TTGGCTTCCG TGCAGCGCTA TGTGCCCGTG
CTGGCCGCCG CCCAAAGCGG CACGCTGACC ACCGACGGCT CGGTGGAGTT TGCCGACGGC
GTGTTCACGC GCAGCCAGGC GCGGCTGACC GGGCAGCAGC TCGATCTGCA AGTCCGCAAG
GATCTGGAGC CGCTGCAGTT GCGCAGCCTT CAGGCGCTGG CCACACATCA GCGCAACGCG
CGCGGCGAGC ACATTCTCCG CGTCGACACG CTGCTCTGGC AACCGTTGAA CCTGCCCGCC
CAACCGCCAT CGGTACCCGA ACTGGCAGGC CCCGGGATCC AGGCGCCGAC CAACCCGGCT
GGCACGCCGC GCGGCGTGCG CAACGTCACC GTCGGGTGGG CGCTCGACGC ACGCGATGCG
CTGCGCAGCC TGCAAGTCAA GGCCGCGACA CTGGATTTGG CCGACCTGCG CAACATCGCC
ACCGCGCTGC CGCTGCCCGC TGGCGTGCTC GAACCACTGC GGACAAAGCA GCCGTCCGGC
CGCATCGACG ATCTGGACAT CAACTGGCAG CGCGATGTCT CCCGCTGGCG GCCAAATACG
CCGGCGCCTG TGCACTTCAC CGGCCGCGCC ACGATGCGCC AGGTCTCGTT CGGCCCCGGT
GCGCTGCCCG CGGTCCCGCC GGGCCAGCAT CCCGAGCCAG CCGTGCCCGG CGTTGAAAAC
CTCTCCGGCA ACGCCGTCTT CTCAGACGAC AAGGGCACGC TGCGCATCGA GTCCAATGAC
ACCGCTCTAC TGCTGCCTGG TACCTTTGCC GACGCGCGCG TGCCGCTGGA CCGGCTACAG
GGCACGTTCA ACTGGACATA TCGCAAGCAG GAACTGGTCG TCGCCAGCGA CAACCTCGCG
TTCTCCAACG ACGACCTGTC AGCGCGCATC ACGGGCAGCT ATCGCCACGC GCCAGACACC
AGCCATCTCG GCACCATCGA CCTGAAGGGC ACGCTCGACC GCGCCGATGT TCCGCGTGTG
CCGCGCTACC TGCCGCTGTC GATCGGACAG CATCTGCGCG ACTACCTGGG CGGTGCGCTG
CAAGCCGGCA CGGCGAATAA CGTCGGGTTC GCACTGGCAG GTGATCTGCA CGACTTTCCG
TTCCGTCCGC CGCACAAAGG TGTCTTCCGC GTGGAAGTGC CGATCCAGGA CGTAACTTAC
CAATCAGCGC CGGCCGAAGC CGCGTACAAC CTGCCCGGCC AGGCGCCAAC GCACCCCGGC
AGTTGGCCGG CATTCACGAA CATCGACGGC ACGGTGACGT TCGATCGCGC ATCGCTCGCG
TTCAAAGTGG CGCGTGCCAA GGTGATGGGC GTAAATCTGC AGGACGTGAA TGGCAGCCTG
CCCGACATGG GCGACCGCAA CCCGCTGCTG GCCATCGAAG CCCGCGGCGA CGGCGCCACG
CAGAATTTCC TGCAGTACAT CGAAGCGAGC CCCATCAGCC AGTGGATCGG GCATTTCACC
AAGGACGCCC GCGCCCAGGG CAACGCCACG CTGGCGCTCA AGCTTGACCT GCCGCTGCAT
GAAATGCGTT CGGCGCGGGC CCAAGGCAGC GTCACGTTCG TACGCAATGA CGTCACGCTG
GTCCCGCAGG CACCGCCGCT GACCGATGTC AACGGCGCGC TGACCTTCAC GCAAAAGGGC
ATCGGTTTCG ATAACCTGCG CGCGCGCTTT GCCGGCGGCG AAATCCGCCC TACGGGCGGC
ACCGCACCCG ACGGCACGAT CCGCATCCAG GTGGCGGGCA CCGCATCGGC GCAAGGGCTG
CGTGAGACGA CGCCGGAAAA CAGCCCGGTG GCCGCCGTCG CCCGCTCGCT GGAGGGCACC
GCCCCGTACA GCGCGACCAT CAGCGTCAAA CAGCGTCGGC CTCTCATTCA GGTCCAGTCG
GATCTGACCC CGATGACGGT GCGTCTACCG GCACCGCTGA ACAAGGCGGC TGGGCAGCCC
TTGCCGGTGC GTTTCGAAAT GCAACCGCTG GCGTCCAACA ACGCCGTCGA CGAAATCGTT
CTGCAGGTCG GGAATATCGT CAGCGCGCGC TACGAGCAAC GCAGCACGGG CAACGGCGTC
GAGGTCCTGC GCGGCGGCAT CGGTGTGCGG CAAGCGGTGC CGCAGCCGCA GGAAGGCGTG
CAAGCGAATC TGGCGCTGGA TCAGTTGGAC GTCGACGCCT GGCGCCATGC CTTTGCTGCA
CCCGCCCCTG ACAAGAGCGC CAGCCAGATT GCCGCCGAAC ATGGTGCCAA TGCAGCCAAC
GCCTCCAACA ACCACAGCGC GTATCTGCCC AGCCACCTGA ACGCCCGCGC GCAGACGCTG
CGCATTCTGG GCCGCGACTT CAACGCCGTG CGCATCGACG CCACGCGCGA TGGCGCCAAT
TGGCAATCGA CCATCGATTC ACGCGAGATT GCAGGCAGCG CGCGCTGGCA CGCCGAAAGC
GCCGCCGTGC CCTTCGGCGA GCTGACGATG CGCCTGTCGC GCATGAGCAT CCCAGACGCC
AAGGAAGAGA CGGCGCTCAC CGAATCGTTG GCCAGCAGCT CGCAGGAAAT TCCATCGCTC
GACCTCGTCG CAGACAAGTT CGACCTGCGC GGCAAAGCGC TCGGCAAGCT GGAAATCAAG
GCGCGCAGCC AGATCACCGA AGGCGCGCCG GTATGGACGC TCGAGACGCT GAAGATCGAG
CAGCCCGCCG CCACGCTCAC GGCGCACGGT ACGTGGCGCA TCCCGCGACG CCTGCGTGGC
GGCGGTGATG ATCCGGAGCG CCGGACGCTG CTCGACTTCA ATCTTGACCT GCGCGACACC
GGCGACTTGC TGCAGAAGAT GGGCTTCGCC AAGGTGATCG ACGGAGCCAA GGGCAAGCTC
GAAGGCCGCG TGGTGTGGCG CGGCTCGCCC ATGTCGATCG ACTACCCGAC GCTCAACGGC
CGCATGGCGC TGAACCTGGA GCGCGGCCAG TTTCTGCCGG TCGATCCGGG CCTGGCCAAG
CTGGCCGGCG TGCTGAGCCT GCAGGGGCTG TTGCATTTCG CGACCGACCT GCGCAGCGCC
ACCGGGCGCG GCACGCCGTT CGAGAGCGTA GCCGCCACCG GCACCATCGC CAGCGGCATC
GCCCACACTG AAGATTTTGC AGTCAAGGGC CCGCAATTCC AGGTGGCCAT GCAGGGCTCG
GCCAACATCC TGGATGAAAC GCAGGACCTG CGCGTCAAGG TCACGCCCAA GGTGGACGCC
ACGTCGGCCT CGCTGGCGGC GGCGTTCATC AATCCGGCCA TCGGGCTGGG CACGCTGGCC
GCGCAGTTGG TCCTGGGCGA TCAGTTGTCG AAGGCATTCG TCACGCAATA CCACGTGACC
GGCAGTTGGG CCGATCCGAA GATCGAGAAA GTCGCATCCG ACAGCAATTC GGGCAGCCAA
TCGCAAACCT CGGCAAAATA G
|
|---|
| Protein sequence | MPRPSQPPES PKSDGGHAST LSTRGVGRPS AWAWLVWLAR RVGAGIGAVF RAPIWRKLWR
VLWKTAAALA VLAVIGMLAV RFILWPRASV AREWMQREAS SALHATVDIG SLETYWEGWH
PAFRAQRIDA HDTAGRRTFA IQDVQARLSW RSLLRMQVTF AALHATQADL LVRRDTQGVL
SVAGMQLSAD TGGDSIFLDQ LLSQGNIDFQ QGAVRWLDEQ QKLPEVALGN VRLQLRSGPT
RHRLEASGTS PTLFNGPIKL HADFRHDLLA RPGDWRHWHG QASWQVDTLQ LASVQRYVPV
LAAAQSGTLT TDGSVEFADG VFTRSQARLT GQQLDLQVRK DLEPLQLRSL QALATHQRNA
RGEHILRVDT LLWQPLNLPA QPPSVPELAG PGIQAPTNPA GTPRGVRNVT VGWALDARDA
LRSLQVKAAT LDLADLRNIA TALPLPAGVL EPLRTKQPSG RIDDLDINWQ RDVSRWRPNT
PAPVHFTGRA TMRQVSFGPG ALPAVPPGQH PEPAVPGVEN LSGNAVFSDD KGTLRIESND
TALLLPGTFA DARVPLDRLQ GTFNWTYRKQ ELVVASDNLA FSNDDLSARI TGSYRHAPDT
SHLGTIDLKG TLDRADVPRV PRYLPLSIGQ HLRDYLGGAL QAGTANNVGF ALAGDLHDFP
FRPPHKGVFR VEVPIQDVTY QSAPAEAAYN LPGQAPTHPG SWPAFTNIDG TVTFDRASLA
FKVARAKVMG VNLQDVNGSL PDMGDRNPLL AIEARGDGAT QNFLQYIEAS PISQWIGHFT
KDARAQGNAT LALKLDLPLH EMRSARAQGS VTFVRNDVTL VPQAPPLTDV NGALTFTQKG
IGFDNLRARF AGGEIRPTGG TAPDGTIRIQ VAGTASAQGL RETTPENSPV AAVARSLEGT
APYSATISVK QRRPLIQVQS DLTPMTVRLP APLNKAAGQP LPVRFEMQPL ASNNAVDEIV
LQVGNIVSAR YEQRSTGNGV EVLRGGIGVR QAVPQPQEGV QANLALDQLD VDAWRHAFAA
PAPDKSASQI AAEHGANAAN ASNNHSAYLP SHLNARAQTL RILGRDFNAV RIDATRDGAN
WQSTIDSREI AGSARWHAES AAVPFGELTM RLSRMSIPDA KEETALTESL ASSSQEIPSL
DLVADKFDLR GKALGKLEIK ARSQITEGAP VWTLETLKIE QPAATLTAHG TWRIPRRLRG
GGDDPERRTL LDFNLDLRDT GDLLQKMGFA KVIDGAKGKL EGRVVWRGSP MSIDYPTLNG
RMALNLERGQ FLPVDPGLAK LAGVLSLQGL LHFATDLRSA TGRGTPFESV AATGTIASGI
AHTEDFAVKG PQFQVAMQGS ANILDETQDL RVKVTPKVDA TSASLAAAFI NPAIGLGTLA
AQLVLGDQLS KAFVTQYHVT GSWADPKIEK VASDSNSGSQ SQTSAK
|
|---|
| |