| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2476 |
|---|
| Symbol | |
|---|
| ID | 8020140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 2593619 |
|---|
| End bp | 2594332 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644831257 |
|---|
| Product | transcriptional regulator, histidine utilization repressor, GntR family |
|---|
| Protein accession | YP_002982420 |
|---|
| Protein GI | 241664060 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2188] Transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR02018] histidine utilization repressor, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00699876 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACACG ACCCGTCCGC CAGCACGCCC GCCTTCCAGC GCATCAAGGA AGACATCCTC
ACGCGCATTC GCAGCGGGGA GTGGCAGGAA GGGGAAATGA TTCCGGGGGA GACGACGCTC
GCGCAGACCT TTGGCGTGTC GCGCATGACG GTCAATCGCG CGCTGCGTGA GTTGACCGCC
GAGCAGATCC TCACGCGCGT GCAGGGGCTG GGAACGTTCG TCGCGCAGCA GAAGTACCAG
GCGACGCTGG TGGCGATCCG CAACATCGCC GAGGAAATTG CAGCGCGCGG TCATCAGCAT
CGCGCCGAAC TGCACAAGTT GGAGCGTGCC CGCGCCAACG AGGCAATGGC GGCTTCGTTT
GGCGTGCCAG CAGGCCGCGT ACTCTTCCAT TCACTGATCG TGCATTTTGA AAACGACCTG
CCGATCCAGG TAGAAGACCG TTGGGTCAAC GCGGCGTTGG CGCCCGAATA CATGGAGCAG
GATTTCACGC AGACCACGCC CAACGCCTAC CTGATGCGTG CCGCCCCGTT GCAGGGCGTG
GATTACGGCA TCGAGGCGCG CCTGCCGCCG CGCGAGATTG CGGAGATGCT GCACATGGAC
GTGCGCGAGC CCTGCCTGAT GCTGCGGCGG AAAACGCTGT CGCAGGGCCA GGTCGCCTCG
GTGGCGACCA TGTGGCATCC CGGCGGGCGT TATCAGTTCA CGGGCAGCTT CTGA
|
|---|
| Protein sequence | MSHDPSASTP AFQRIKEDIL TRIRSGEWQE GEMIPGETTL AQTFGVSRMT VNRALRELTA
EQILTRVQGL GTFVAQQKYQ ATLVAIRNIA EEIAARGHQH RAELHKLERA RANEAMAASF
GVPAGRVLFH SLIVHFENDL PIQVEDRWVN AALAPEYMEQ DFTQTTPNAY LMRAAPLQGV
DYGIEARLPP REIAEMLHMD VREPCLMLRR KTLSQGQVAS VATMWHPGGR YQFTGSF
|
|---|
| |