| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2438 |
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| Symbol | |
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| ID | 8020102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 2556111 |
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| End bp | 2558630 |
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| Gene Length | 2520 bp |
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| Protein Length | 839 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644831219 |
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| Product | nitrate reductase catalytic subunit |
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| Protein accession | YP_002982382 |
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| Protein GI | 241664022 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.627702 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTCT CTCGCCGCGC GTTCATTAAG CAGACCGCTG CCGCCGCGAC CGCTTCGGTG
GCCGGCGTCA CGCTTCCTGC TGGCGCCGCC GCCAACCTCG TCACCGACAA AGAACTGACG
CAGCTCAAGT GGTCGAAGGC GCCTTGCCGA TTCTGCGGCA CGGGCTGCGG CGTTGAAGTG
GCCGTCAAGG ACAATCGCGT GGTGGCCACG CAGGGCGACC CGAAGGCCGA GGTCAATCGG
GGCCTGAACT GCGTGAAGGG CTACTTCCTC TCGAAGATCA TGTACGGCAA GGATCGGCTG
ACCCAGCCGC TGCTGCGCAT GACGAACGGC AAGTACGACA AGAACGGCGA GTTCACGCCC
GTCACCTGGG ACCGCGCGTT TGACGAGATG GCGGTGCAGT TCAAGCGCGT CATCAAGGAA
AAGGGCCCGA CCGCCGTCGG CATGTTCGGC TCGGGTCAAT GGACCGTTTT TGAGGGTTAC
GCCGCCGTCA AGCTAATGAA GGCGGGCTTC CGCTCGAACA ACCTCGACCC CAACGCGCGC
CACTGCATGG CCTCTGCCGT GGCCGGCTTC ATGCGAACGT TCGGCATGGA CGAGCCGATG
GGCTGCTACG ACGATTTCGA AGTCGCCGAC GCGTTCGTGC TGTGGGGCTC GAACATGGCG
GAGATGCACC CCATCCTCTG GTCGCGCGTG ACGGACCGGC GCCTCTCCGC GCCCAAGACG
AAGGTCGCGG TGCTGTCGAC GTTTACGCAC CGCTCATTCG ATCTGGCCGA CATCCCGATC
GTCTTCACAC CGCAGGCCGA TCTCGCGATG CTCAACTACA TCGCGAACTA CATCATCACC
AACAAGAAGG TCAACACGGA CTTCGTCAAC AAGCACACCG TCTTCAAGCA GGGCGTGACC
GACATCGGCT ACGGCCTGCG GCCCGACAAC CCCTTGCAGA AGGCCGCCAA GAACGCCGAC
AAGGTGGGTG ACTCCAAGCC GATCTCGTTC GACGAGTTTG CGAAGTTCGT CTCGACGTAC
GACCTGGACT ACACCACCAA GCTGGCGAAC CCGGACAAGA GCAAGGAGAA GGAGTTCAAA
CAGCAGCTCC AGAAGCTTGC CGAGCTGTAC GCCGATCCGA AGATCAAGGT CGTGTCGTTC
TGGACCATGG GTTTCAACCA GCACACCCGC GGCACCTGGG CGAACAACAT GATCTACAAC
CTGCACCTGC TGACAGGGAA GATCGCCACA CCGGGCAACA GCCCTTTCTC CCTGACGGGC
CAGCCTTCGG CATGCGGCAC CGCGCGCGAG GTGGGCACGT TCTCGCACCG CTTGCCGGCC
GACATGGTGG TGACCAACCC GAAGCACCGT GAAGAAGCCG AGCACATCTG GAAGCTGCCG
CCCGGCACGA TCCCTGAAAA GCCCGGCTAT CACGCGGTAC TGCAAAACCG CATGCTGAAG
GACGGCAAGC TCAACGCGTA CTGGGTGCAG GTGAACAACA ACATACAGGC CGGCGCCAAC
ATCAACGAGG AAGGCTACCC GGGCTACCGC AATCCGGCGA ATTTCATTGT TGTTTCGGAC
GTGTACCCGA CCGTCACCGC ACTGGCCGCC GACTTGATCC TCCCGAGCGC GATGTGGGTT
GAGAAGGAAG GCGCCTACGG CAACGCCGAG CGCCGCACGC AGTTCTGGCA TCAACTCGTG
GATGCGCCGG GTGAGGCGCG ATCCGACCTG TGGCAGCTGG TGGAGTTCTC CAAGCGTTTC
AAGGTGGAAG AAGTCTGGCC CGAAGACCTC ATCGCCAAAA AGCCGGAGCT GCGCGGCAAG
ACCCTCTACG ACGTGCTCTA CCGCAACGGC AATGTCGACA GGTTCCCGCT CAAGGACGTC
GACCCGGAAT ACAACAATGC CGAAGCCAAG GCGTTCGGCT TCTACCTGCA GAAGGGCCTG
TTCGAGGAGT ACGCAAGCTT CGGGCGCGGC CACGGCCATG ACCTGGCACC GTTCGACGAT
TATCACAAGG CGCGCGGATT GCGCTGGCCG GTGGTCAACG GAAAAGAGAC GCGCTGGCGC
TACAAGGAAG GCAGCGATCC GTACGTCAAG GCCGGCACCG GCTACCAGTT CTACGGCAAC
CCGGATGGCA AGGCGGTGAT CTTCGCCCTG CCCTATGAGG CACCGCCGGA AGTGCCAGAC
AAGGAATACC CGTTCTGGTT GTCGACCGGC CGCGTGCTGG AGCACTGGCA CTCGGGCTCG
ATGACGCGCC GGGTGCCCGA ACTGTATCGC GCCTTCCCGA ATGCGGTCTG CTTCATGCAC
CCGGAAGATG CAAACGCGCT TGGGCTGCGG CGTGGTGTCG AGGTCGAAGT GATCTCGCGG
CGCGGCAAGA TGCGCACCCG CATTGAAACA CGCGGCCGCA ACCAGCCACC GAAGGGCCTG
GTGTTCGTGC CGTGGTTCGA TGCGAGCCAG CTCATCAATA AGGTCACACT GGATGCAACC
TGCCCGATCT CGCTCCAGAC GGATTTCAAG AAATGCGCCG TCAAGATCGT GAAGGTCTGA
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| Protein sequence | MKVSRRAFIK QTAAAATASV AGVTLPAGAA ANLVTDKELT QLKWSKAPCR FCGTGCGVEV
AVKDNRVVAT QGDPKAEVNR GLNCVKGYFL SKIMYGKDRL TQPLLRMTNG KYDKNGEFTP
VTWDRAFDEM AVQFKRVIKE KGPTAVGMFG SGQWTVFEGY AAVKLMKAGF RSNNLDPNAR
HCMASAVAGF MRTFGMDEPM GCYDDFEVAD AFVLWGSNMA EMHPILWSRV TDRRLSAPKT
KVAVLSTFTH RSFDLADIPI VFTPQADLAM LNYIANYIIT NKKVNTDFVN KHTVFKQGVT
DIGYGLRPDN PLQKAAKNAD KVGDSKPISF DEFAKFVSTY DLDYTTKLAN PDKSKEKEFK
QQLQKLAELY ADPKIKVVSF WTMGFNQHTR GTWANNMIYN LHLLTGKIAT PGNSPFSLTG
QPSACGTARE VGTFSHRLPA DMVVTNPKHR EEAEHIWKLP PGTIPEKPGY HAVLQNRMLK
DGKLNAYWVQ VNNNIQAGAN INEEGYPGYR NPANFIVVSD VYPTVTALAA DLILPSAMWV
EKEGAYGNAE RRTQFWHQLV DAPGEARSDL WQLVEFSKRF KVEEVWPEDL IAKKPELRGK
TLYDVLYRNG NVDRFPLKDV DPEYNNAEAK AFGFYLQKGL FEEYASFGRG HGHDLAPFDD
YHKARGLRWP VVNGKETRWR YKEGSDPYVK AGTGYQFYGN PDGKAVIFAL PYEAPPEVPD
KEYPFWLSTG RVLEHWHSGS MTRRVPELYR AFPNAVCFMH PEDANALGLR RGVEVEVISR
RGKMRTRIET RGRNQPPKGL VFVPWFDASQ LINKVTLDAT CPISLQTDFK KCAVKIVKV
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