| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2369 |
|---|
| Symbol | |
|---|
| ID | 8020033 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 2491346 |
|---|
| End bp | 2492821 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644831151 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_002982314 |
|---|
| Protein GI | 241663954 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG2169] Adenosine deaminase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.609192 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCTCG ACCACAACGC CTGCTACCAC GCCGTGCAGT CGCGCGATCG CCGCTTCGAC
GGCTGGTTCT TCGTCGGTGT GACATCCACC GGCGTATATT GCCGCCCGGT TTGCGCGGTC
CGCACGCCGC TGGAGAAGAA CTGCCGCTTC TTCACCACGG CCGCCGCCGC CGAGCGCGCG
GGTTTTCGGC CGTGCCTGCG CTGCAGGCCG GAACTGGCAC CGGGCCACAG CCTGGCGGAA
ATGTCGTCCA ACCTTGCACG GGCCGCCGCC CGCATGATCG ACGAGGGCTT TCTGCAAGAG
CACGACCTGG CCGCACTGGC CGCAGCCGTG GGCGTGACCG ACCGCCACCT GCGCCGCATC
TTCCGCGCCG AGTTCGACGT CTCGCCCATC GAATATGCGC AAACCCAGCG TCTGCTGCTC
GCCAAACGGC TGCTGACCGA TACCGCCATG CCCGTCGGCG ATGTTGCCTT TGCAGCCGGT
TTCGGGAGCG TCCGACGGCT GAACAGCGGC TTTAGCGAGC ATTACGGCTT TGCTCCTACG
CGCCTGCGTT CGCGCACGAC GGCGCCCCGC GCCGAAGACG GCCCCACGCT CATGCTCGGC
TACCGGCCGC CGTTTGCGTG GGACGCCTTG CTTGCGTTTC TGCAGGCACG TGCAGTCGAT
GGCGTCGAGG TGGTCGACGC TGACAGCTAC GCCCGCACAA TTGCCGTCGA CTACGGCGGC
ATGCGGCACA TCGGCTGGCT GCACGCGCGC AATGTGCCGC AACGCCACGC AGTGGCGCTA
ACTTTGTCGC CCAGCCTGCT GCACGCCATG CCGCCGGTGC TGGCACGCGC GCGGCGGCTG
TTTGACCTCG ATTGCCGGCC CGATCTGGTC GACGCGCACC TCGGCACGCT GGCTGCCGAG
ACGCCCGGCC TGCGCGTGCC GGGCGCCGTG GACGGCTTCG AGATTGCCGT GCGCGCCATC
GCCGGGCAGG TCATTTCGTT GGCGCAGGCG CGGCGCATTC TTTCGCGCAT GACTGCCGCG
TATGGCGTGC CATTGCAGCA ATCGCGCGAA GGGCTGTTGG CGGCGTTCCC GAGCGCGGCT
GCACTGGCGA ACATCGACGC GCAGGCGCTG TCCGCGCAGA CCGGTCTGCA GGCCAGCCGC
GCTGCCGCCG TCGTCGAACT TGCCCGCGCC ATCGACTGCG GCAGGCTGCG GCTCGAACCC
CTGGTGCCGC TCGCCCCTAC GCTGGCTGCC CTGCAAGCGC TGCCCGGTGT GGGCGAATGG
ACTGCGCAAT ACGTTGCCAT GCGGGCGCTG AGCTGGCCGA ACGCGTTTCC GCTGGGCGAC
TACGTCTTGC GCAAACGCCT TGCAGACGCC GACGGTACGT TGCCCGGGCG CCGCGCCATG
ATCGAGCGTG CCGAGCCCTG GGCGCCGTGG CGCGCGTATG CCGCCATGCA CCTCTGGCAC
CGCGAAATTG CGCTCCCCCA ACCTGTATCG CATTGA
|
|---|
| Protein sequence | MHLDHNACYH AVQSRDRRFD GWFFVGVTST GVYCRPVCAV RTPLEKNCRF FTTAAAAERA
GFRPCLRCRP ELAPGHSLAE MSSNLARAAA RMIDEGFLQE HDLAALAAAV GVTDRHLRRI
FRAEFDVSPI EYAQTQRLLL AKRLLTDTAM PVGDVAFAAG FGSVRRLNSG FSEHYGFAPT
RLRSRTTAPR AEDGPTLMLG YRPPFAWDAL LAFLQARAVD GVEVVDADSY ARTIAVDYGG
MRHIGWLHAR NVPQRHAVAL TLSPSLLHAM PPVLARARRL FDLDCRPDLV DAHLGTLAAE
TPGLRVPGAV DGFEIAVRAI AGQVISLAQA RRILSRMTAA YGVPLQQSRE GLLAAFPSAA
ALANIDAQAL SAQTGLQASR AAAVVELARA IDCGRLRLEP LVPLAPTLAA LQALPGVGEW
TAQYVAMRAL SWPNAFPLGD YVLRKRLADA DGTLPGRRAM IERAEPWAPW RAYAAMHLWH
REIALPQPVS H
|
|---|
| |