| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2343 |
|---|
| Symbol | |
|---|
| ID | 8020007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2466498 |
|---|
| End bp | 2468786 |
|---|
| Gene Length | 2289 bp |
|---|
| Protein Length | 762 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644831126 |
|---|
| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
|---|
| Protein accession | YP_002982289 |
|---|
| Protein GI | 241663929 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.332707 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.192928 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCGC AAGAACTGGA AGTCAGCCTG CATATGGCGT TTGTTGAAGC CCGTCAGGCT
CGCCACGAAT TCATTACGGT GGAGCATCTG CTGCTTGCGC TGCTGGACAA CCCGACGGCC
GCCGAGGTGC TTCGCGCCTG CGCTGCCAAC ATCGAAGACC TCCGCACGCA CCTGAAGAAC
TTCATCGCCG ACAACACCCC GGTGGTACCC GGCACGGACG AGGTGGACAC GCAGCCGACG
CTCGGCTTCC AGCGCGTGAT CCAGCGCGCC ATCATGCATG TGCAATCGAC CTCCAACGGC
AAGAAGGAAG TCACGGGCGC GAACGTGCTG GTGGCCATCT TCGGCGAGAA GGATTCGCAC
GCGGTGTACT ACCTCCAGCA ACAGGGCGTG ACCCGGCTGG ACGTCGTCAA CTTCATCAGC
CACGGTATCC GCAAGGATCA GGCTGAGCCC GCCAAGCAAG GCGAGGGCAA CCCTGAAGGC
GAAGGCGGCG ACGGCAAGGA AAGCCCGCTC GAGCAGTTCA CCCAGAACCT GAACGCGCTG
GCCAAGGCCG GCAAGATCGA TCCGCTGATC GGCCGCGAGC AGGAAGTCGA GCGCGTGGTG
CAGGTGCTGT GCCGCCGCCG CAAGAACAAT CCGCTGCTGG TGGGCGAGGC CGGTGTCGGC
AAGACGGCCA TCGCCGAGGG CCTGGCATGG CGCATCACCA AGGGCGAAGT GCCGGACATT
CTCGCGAAGT CCGTCGTCTA CTCGCTCGAC ATGGGCGCGC TGCTGGCCGG CACCAAGTAC
CGCGGCGACT TTGAGCAACG CCTGAAGGGC GTGCTGAAGT CGCTCAAGGA CAACCCCAAC
GCGATCCTGT TCATCGACGA AATCCATACG CTGATCGGCG CGGGCGCCGC TTCGGGCGGC
ACGCTGGACG CCAGCAATCT GCTCAAGCCG GCGCTGTCGT CGGGCGCGCT CAAATGCATC
GGGGCGACGA CGTTCACTGA ATACCGCGGC ATCTTTGAGA AGGACGCAGC ACTGTCCCGC
CGCTTCCAGA AGATCGACGT GGTGGAGCCG ACGGTCGATC AGACCGTGCA GATTCTGCGT
GGCCTGAAGT CGCGCTTTGA AGAACACCAT GGCGTGAAGT ACGCGTCGTC GGCGCTGACC
GCCGCGGCTG AATTGTCGGC GCGCTTCATC ACCGATCGTC ACCTGCCCGA CAAGGCGATC
GACGTGATCG ACGAAGCCGG TGCAGCGCAG CGGATCCTGC CGAAGTCGAA GCAGAAGAAG
ACGATCGGCA AGGGCGAGAT CGAGGACATC GTCTCGCGCA TCGCCCGTGT CCCGCCGCAA
AGCGTGTCGC AGGACGATCG CAGCAAGCTG CAGACGCTGG AGCGCGACCT GAAGTCGGTC
GTGTTCGGGC AGGACCCTGC CATCGATGCG TTGGCTTCGG CCATCAAGAT GTCGCGTGCC
GGCCTAGGCA AGACGGATAA GCCGATCGGC TCGTTCCTGT TCAGCGGCCC GACGGGCGTG
GGCAAGACGG AAGTCGCCAA GCAGCTCGCG TTCATCCTCG GCATCGAGCT GATCCGCTTC
GACATGTCGG AGTACATGGA GCGCCATGCG GTGAGCCGGC TGATCGGCGC GCCTCCGGGC
TACGTGGGCT TCGACCAAGG CGGTCTGCTG ACAGAAGCCG TGACCAAGAA GCCGCACTGC
GTGCTGCTGC TGGACGAGAT CGAGAAGGCG CACCCGGACA TCTTCAACAT CCTGCTGCAG
GTGATGGACC ACGGCGCGCT GACGGACAAC AACGGCCGCA AGGCGGATTT CCGCAACGTG
ATCATCATCA TGACGACCAA TGCGGGCGCC GAGACGATGA ACAAGGCAAC GATCGGTTTC
ACCACGGCGC GCGAACAGGG CGACGAGATG GCCGACATCA AGCGCATGTT CACGCCGGAG
TTCCGCAACC GTCTGGACGC AACCATCAGC TTCCGCTCGC TGGATGAGGA AATCATCATG
CGCGTGGTCG ACAAGTTCCT CATGCAGCTG GAAGAGCAAC TGCACGAGAA GAAGGTGGAT
GCCATCTTCA CCGAGAAGCT GCGTCGCTTC CTGGCGAAGA AGGGCTTCGA CCCGCTGATG
GGCGCGCGCC CGATGCAGCG TTTGATTCAG GATCTGATCC GCAAGGCACT GGCCGACGAA
CTGCTGTTCG GCAAGCTGGT GAATGGCGGA AAGGTGGTCG TGGATCTGGA CGATGCGGAT
GCGGTGAAGC TGGAGTTCTC CGAGAACGAA GCGCCGCCGG CACCTGCCCA GGAAGAAGCG
GAAGCCTGA
|
|---|
| Protein sequence | MIAQELEVSL HMAFVEARQA RHEFITVEHL LLALLDNPTA AEVLRACAAN IEDLRTHLKN
FIADNTPVVP GTDEVDTQPT LGFQRVIQRA IMHVQSTSNG KKEVTGANVL VAIFGEKDSH
AVYYLQQQGV TRLDVVNFIS HGIRKDQAEP AKQGEGNPEG EGGDGKESPL EQFTQNLNAL
AKAGKIDPLI GREQEVERVV QVLCRRRKNN PLLVGEAGVG KTAIAEGLAW RITKGEVPDI
LAKSVVYSLD MGALLAGTKY RGDFEQRLKG VLKSLKDNPN AILFIDEIHT LIGAGAASGG
TLDASNLLKP ALSSGALKCI GATTFTEYRG IFEKDAALSR RFQKIDVVEP TVDQTVQILR
GLKSRFEEHH GVKYASSALT AAAELSARFI TDRHLPDKAI DVIDEAGAAQ RILPKSKQKK
TIGKGEIEDI VSRIARVPPQ SVSQDDRSKL QTLERDLKSV VFGQDPAIDA LASAIKMSRA
GLGKTDKPIG SFLFSGPTGV GKTEVAKQLA FILGIELIRF DMSEYMERHA VSRLIGAPPG
YVGFDQGGLL TEAVTKKPHC VLLLDEIEKA HPDIFNILLQ VMDHGALTDN NGRKADFRNV
IIIMTTNAGA ETMNKATIGF TTAREQGDEM ADIKRMFTPE FRNRLDATIS FRSLDEEIIM
RVVDKFLMQL EEQLHEKKVD AIFTEKLRRF LAKKGFDPLM GARPMQRLIQ DLIRKALADE
LLFGKLVNGG KVVVDLDDAD AVKLEFSENE APPAPAQEEA EA
|
|---|
| |