| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2317 |
|---|
| Symbol | |
|---|
| ID | 8019981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2438527 |
|---|
| End bp | 2439654 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644831100 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_002982263 |
|---|
| Protein GI | 241663903 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.156371 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00287138 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAA ATTTCAAAGC GCCGATGAAG ACGCGCGCCG CGTTGTACGG CTTCCTGATC
CTTGCGATCT TCGCGCCGTT CATCGTGGGA GCCGCAGGTG GCAACTACTG GGTGCGCGTG
CTGGACTTCG CACTGCTGTA CATCATGCTG GCCCTGGGCC TGAACATCGT GGTGGGCTTT
GCCGGCCTGC TCGACCTGGG CTACATCGCG TTCTATGCGG TGGGTGCCTA CATGATGGCG
TTGCTGGGTT CGCCGCACCT GTCCAATCAG TTCGAGTGGA TCCACAACCT GTTCCCTAAC
GGGCTGCACC TGATCGTATG GTGGGTGATT CCGCTCGGTG CCGGGCTGGC GGCGCTATTC
GGTATTCTGC TGGGCACGCC GGTGCTGAAG CTGCGCGGTG ACTACCTCGC CATCGTGACG
CTGGGCTTTG GTGAAATCAT CCGGATCTTC ATGAACAACC TCGACCGCCC GGTGAACATC
ACCAACGGTC CGAAGGGCAT CAACCTGATC GAGCCGGTCA AGATCTTCGG GTTCGACTTT
TCGAAGCGCC ACGATTTCTT CGGCATCCGC TTCGACTCGG TCTACATGTA CTACTACCTG
TTCGTGATCC TGGCCGCGAT CATCATCATC GTGTGCCTGC GGTTGCAGAA CTCGCGTATC
GGTCGTGCAT GGGTGGCGCT GCGTGAAGAT GAAATCGCTG CCAAGGCGAT GGGCATCAAC
ACCCGCAACA TCAAGCTGCT GGCCTTTGCG ATGGGCGCGT CGTTCGGTGG TGTGTCGGGT
GCGATGTTCG CGTCGTTCCA GGGCTTCGTG TCGCCGGAAT CGTTCGTGCT GTGGGAGTCG
ATCTACATCC TGGCGATCGT GGTGCTGGGC GGCATGGGCC ATATCCCGGG CGTGATCCTG
GGCGGCATTC TGCTGGTCGG TTTCCAGGAG TTGCTGCGTG CGCTGGCCGA GCCGGTGCAG
AACAAGCTGT TCGGCCATGT GATCGTGGAA GCGGAAGTGC TTCGTCAGCT GCTGTTCGGC
CTGGCGATGG TGGTGGTGAT GCTGTATCGC CCGTCGGGCC TGTGGCCCTC GCCGCGCAAG
GAAGACCGTC CGCAAAAGCA GCGGGCTGGT GGACTGTCCC GTATCTGA
|
|---|
| Protein sequence | MTENFKAPMK TRAALYGFLI LAIFAPFIVG AAGGNYWVRV LDFALLYIML ALGLNIVVGF
AGLLDLGYIA FYAVGAYMMA LLGSPHLSNQ FEWIHNLFPN GLHLIVWWVI PLGAGLAALF
GILLGTPVLK LRGDYLAIVT LGFGEIIRIF MNNLDRPVNI TNGPKGINLI EPVKIFGFDF
SKRHDFFGIR FDSVYMYYYL FVILAAIIII VCLRLQNSRI GRAWVALRED EIAAKAMGIN
TRNIKLLAFA MGASFGGVSG AMFASFQGFV SPESFVLWES IYILAIVVLG GMGHIPGVIL
GGILLVGFQE LLRALAEPVQ NKLFGHVIVE AEVLRQLLFG LAMVVVMLYR PSGLWPSPRK
EDRPQKQRAG GLSRI
|
|---|
| |