| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2315 |
|---|
| Symbol | |
|---|
| ID | 8019979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2437004 |
|---|
| End bp | 2437720 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644831098 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002982261 |
|---|
| Protein GI | 241663901 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.129419 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000435411 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAG TAATGTTGAA GATCGACAGC CTGAAGGTCG CTTACGGCGG CATCCAGGCG
GTGAAGGGCG TGGATCTGGA GATTCGCGAA GGTGAGTTGG TCACGCTGAT CGGTGCCAAC
GGCGCCGGCA AGACGACCAC CATGAAGGCC ATCACCGGCC TGCAGGGCTG GGCCGGCGGT
GACGTGCAGT ATCTGGGCAA GTCCATCAAG GGCGTGCCGA GCTACAACCT GCTCAAGCAG
GGTCTGGCGA TGGTGCCGGA AGGCCGCGGC GTGTTCGCGC GCATGACCAT CGTCGAGAAC
CTGCAGATGG GTGCCTTCAC GCGCAACGAC GAGGCCAACA TCAAGGCTGA CATCGACCGC
ATGTTCGGCA TCTTCCCGCG CCTGAAGGAA CGTGCAAACC AGCTGGCCGG CACGATGTCG
GGCGGCGAGC AGCAGATGCT GGCCATGGCG CGTGCGCTGA TGAGCCAACC GAAGCTGCTG
CTGCTGGATG AGCCGTCGAT GGGTCTCTCG CCGATCATGG TGGAGAAGAT CTTCGAGGTC
GTGCGCGACA TCTCGGCGCA AGGCGTGACC GTGCTGCTCG TCGAGCAGAA CGCGCGCTTG
GCACTCCAGG CTGCGCACCG CGGCTACGTG ATGGACTCCG GTCTCATCAC CATGAGCGGC
GATGCCAAGC AGATGCTGGA CGATCCGAAG GTGCGTGCGG CCTACCTGGG CGAGTAA
|
|---|
| Protein sequence | MKPVMLKIDS LKVAYGGIQA VKGVDLEIRE GELVTLIGAN GAGKTTTMKA ITGLQGWAGG
DVQYLGKSIK GVPSYNLLKQ GLAMVPEGRG VFARMTIVEN LQMGAFTRND EANIKADIDR
MFGIFPRLKE RANQLAGTMS GGEQQMLAMA RALMSQPKLL LLDEPSMGLS PIMVEKIFEV
VRDISAQGVT VLLVEQNARL ALQAAHRGYV MDSGLITMSG DAKQMLDDPK VRAAYLGE
|
|---|
| |