Gene Rpic12D_2168 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_2168 
Symbol 
ID8019830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2309445 
End bp2310896 
Gene Length1452 bp 
Protein Length483 aa 
Translation table11 
GC content67% 
IMG OID644830950 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_002982114 
Protein GI241663754 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.647242 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTGC CAAACGGTTC CGCCATGTCT TCGTGTCACG CCAACACCAT TGATACCGCT 
GCCCCGGCTC ACTTGCAGCC CGATCTCAGC CGTTGGCGCC GCAACGCCAC GCTGGGCATT
CTCACGTCGG GCGTGTTCAT GGCGGTGCTC GACACCACCG TGGTCAACGT GGCGCTCATC
GCCATGCGCG ACAGCCTGCA CGGCAGCGTC GCAGAACTTG CCTGGATTGT TGACGCTTAC
ACGCTGGCGT TTGCCGCTTT CATCCTCACG GGCGGTTTGC TGAGCGATCG CATTGGCGCG
CGCACCGTGT TCATGGCGGG AATGGCGGTC TTCATTGTTG CGTCGGCCGG TTGTGGAGTG
GCGCCTTCCG TGGCCACGCT GATTGCTGCG CGCATCCTGC AGGGCGTGGG CGCGGCGATG
TTCCTGCCGA GTTCGCTGTC GCTCATTCGC AGCACATTTC AAGATCCGCG CGAGCGCGCA
TGGGCCATCG GCCTGTGGGG CGCCATCGTA GCGACTGCCG CAGCCGTGGG CCCGGCGGTG
GGCGGCGTGC TGGTCGACAC ATACGGCTGG CGCAGCGCCT TCCTGATCAA CGTGCCGCTG
GGCGTGGTCG GCATGCTGGG TACGTGGATG ATCGTGCGCA ACGACCAGCC GGCACGGGCG
AAGCCGTTCG ACTGGGCGGG GCAGGTGACG AGCGCGGTGA TGCTCGCAGC GCTATGTTTC
GCTGCGATTG AGTGGCCGGT GCGCGGCGCG CAATCGCCGT GGGTGTGGGG TGCCGCGCTG
CTGACGGTGG CGGCCGGTTC GCTGTTCGTT ATGGCCGAAC GCCGTGCGCG GGCGCCGCTC
GTGCCGCTGG CCTGGCTGGG GCATCGCACG CTGGGCGCGG TCAACGGCGT GGGGTTCCTA
CTGAATTTCG GCTATTACGG TGCACTGTTC GTGCTGAGCC TGCATTTGCA GAACGTCGAA
CATCTCAGCG CACGCCAGAC GGGCCTCGTC ATGTTGCCGA TGGCGATCAG CCTGTCGGCG
GGCAATATCT TCGCCGGCAA GTTGATGGCG CATTTTTCTA TGCCGACGAT GATGCTCAGC
GGCCTCGTGA TCGGCGCATC GGGTTTGCTG GCCACGTCGG CCGCGCTGAC AGGGCAGGTG
CACCCCTGGG TGGTGAGTGC AGCGATGGTG GCGTACGGCG GCGGTACCGC GCTGGCGATT
GCGCCGATGA CCTCGACGAT CCTGTCTGCG GCGCCGGGGG AGCTGGCCGG CACGGCGTCG
GGCTTGCTCA ACGCCGCGCG GCAGACGGGC AGTTTGCTGG GCGTGGCAGC GGCGGGCGCC
GTCGTGACGG TGGTGCCCGA GCTGGCGCAC GCCTCGCCAA TGGTGTTTGG CCTCATGACG
CTGTCGTACG CCGGCGCGAT GGCGATGGCG TGGATCAGCC GACGCCCGGC CGCCACCGCG
CTGGCTGCCT GA
 
Protein sequence
MKLPNGSAMS SCHANTIDTA APAHLQPDLS RWRRNATLGI LTSGVFMAVL DTTVVNVALI 
AMRDSLHGSV AELAWIVDAY TLAFAAFILT GGLLSDRIGA RTVFMAGMAV FIVASAGCGV
APSVATLIAA RILQGVGAAM FLPSSLSLIR STFQDPRERA WAIGLWGAIV ATAAAVGPAV
GGVLVDTYGW RSAFLINVPL GVVGMLGTWM IVRNDQPARA KPFDWAGQVT SAVMLAALCF
AAIEWPVRGA QSPWVWGAAL LTVAAGSLFV MAERRARAPL VPLAWLGHRT LGAVNGVGFL
LNFGYYGALF VLSLHLQNVE HLSARQTGLV MLPMAISLSA GNIFAGKLMA HFSMPTMMLS
GLVIGASGLL ATSAALTGQV HPWVVSAAMV AYGGGTALAI APMTSTILSA APGELAGTAS
GLLNAARQTG SLLGVAAAGA VVTVVPELAH ASPMVFGLMT LSYAGAMAMA WISRRPAATA
LAA