| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2008 |
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| Symbol | dnaE |
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| ID | 8019668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 2134168 |
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| End bp | 2137686 |
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| Gene Length | 3519 bp |
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| Protein Length | 1172 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644830794 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_002981960 |
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| Protein GI | 241663600 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.244656 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.455713 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTCGC CGCGCTTCGT CCACCTCCGT CTCCACTCCG AATATTCCGT CGTCGATGGC
AATGTCCGTC TCGACGATGC CGTCAAGGCT GCCGCCAAAG ATGGCATGGG CGCCTTGGCG
CTGACCGATC TCGCCAATGC CTTCGGGCTG GTGCGCTTCT ACAAGGAAGC GCGTGGCAAG
GGCGTGAAGC CCATCGTCGG GGCTGACGTG TGGATCACCA ATCACGACGA GCGCGACAAG
CCGACCCGCC TGCTGCTGTT GGTGCGGGAC AAGCAGGGTT ACCTGAACCT GTGCCAGTTG
CTGGCCAGGG CCTGGCTCTC CAACCAGCAT CGCGGTCGTG CGGAAATCGC CCCCGAATGG
TTCGACGAGC CCGGCGTTGA GAATGCGCCG CTGGCCGCCG GTCTGCTGGC GCTCTCCGGC
GCCATGGCGG GTGATATCGG CGTGGCGCTG GCCAATGGCA ACGAGGCGCT GGCGCGCAAG
CTGGCGACGC ATTGGTCCCG CGTGTTTCCG GGCGCTTTCT ACATCGAACT ACAGCGCGCG
GGGCACGCCG GTACTGAGGC CTACATCCAG CAAGCGGTGA AGCTTGCATC GGCCATGCAG
TTGCCGGTGG TCGCCACACA CCCGGTGCAG TTCATGACGC CGGACGATTT CACGGCCCAC
GAGGCACGCA CCTGTATCGC AGAGGGTGAA CTGCTCGCCA ATCCGCGCCG GGCCCGCCGC
TTCACGACCG AACAGTATTT CAAGACGCAG GACGAGATGT GCGCGCTGTT TGCCGACATC
CCGTCCGCGC TGGCCAACGC AGTCCAGATC GCGCAGCGCT GCAACCTCAA GCTGGAGCTG
GGCAAGCCCA AGCTGCCCCG GTTTCCGACG CCCGACGGCA TGTCGCTGGA CGACTACCTC
GTCCAGCTCG CCAAGGAAGG GCTGGAAAAG CGCATGGAAG TGCTTTTCCC CGACGAGGCC
GTGCGCGAAT CCAAACGCGC CGAGTATTAC GCCCGCCTGG AATTCGAGAC GGGCACCATC
ATCAAGATGG GCTTCCCGGG CTATTTCCTG ATCGTTGCAG ACTTCATCAA CTGGGCCAAG
AACAACGGCG TGCCGGTGGG GCCGGGCCGG GGCTCGGGTG CCGGCTCGCT GGTGGCGTAT
GCGCTGGGGA TTACCGATCT GGATCCGCTC AAATACAACC TGCTGTTCGA GCGTTTCCTG
AATCCGGAAC GTGTGTCGAT GCCCGACTTC GACATCGACT TCTGCCAGCA CGGCCGTGAC
CGCGTCATCC AGTACGTGAA AGAAAAGTAC GGCAAGGACG CCGTCTCGCA GATCGCCACC
TTCGGCACCA TGGCCGCCAA GGCCGCGGTG CGCGACGTGG GCCGCGTGCT CGATCTCGGC
TACAACTTTG TTGACGGCGT CGCCAAGCTG ATTCCGTTCA AGCCGGGCAA GCTCGTTACG
CTCGAAGAAG CGAAGAAGGA AGAGCCGCTG CTGGCCGAGC GCGAGGCCAA CGAAGAAGAA
GTCAAGCAGC TGCTGGAACT TGCGCAGCGC GTCGAAGGCA TGACGCGTAA CGTCGGCATG
CATGCGGGCG GTGTGCTGAT CGCCCCGGGC AAGCTGACCG ACTTCTGCCC GCTCTACACG
CAAGGCGGGG AAGACGCCGG CGTCGTCAGC CAGTACGACA AGGACGATGT GGAAGCCGTT
GGCCTGGTCA AGTTCGACTT CTTGGGCCTG ACCACGCTCA CGATCCTCGA CTGGGCCGAG
CGCTACATCC GCATGCTCGA TCCGTCCAAG GCGGATTGGA ACTGCAGCCA TATTCCGCTG
ACGGACAAGA AGGCGTTCGA CATCCTGAAG ACGGCCAACA CGGTGGCCGT GTTCCAGCTG
GAAAGCCGCG GCATGCAGGG CATGCTGAAG GACGCCAAGC CTGACCGTTT TGAGGACATC
ATCGCCCTCG TGGCGCTCTA TCGCCCGGGC CCGATGGACC TGATCCCCAG CTTCTGCGCA
CGCAAGCACG GCCGCGAGAA GGTGGAGTAC CCCGACCCGC GCGTCGAGCC GGTGCTCAAG
GAGACCTACG GCATCATGGT CTACCAGGAG CAGGTGATGC AGATGGCGCA GATCGTGGGC
GGTTACTCGC TCGGCGGCGC CGACTTGCTG CGCCGTGCGA TGGGTAAGAA GAAGGCCGAA
GAAATGGCCG AGCACCGCGC GCTGTTCCGG GCGGGTGCGG CCAAGGACGG GCTCTCCACC
GAAAAGGCTG ATGAAATCTT CGACCTGATG GAGAAGTTCG CCGGCTACGG TTTCAACAAG
TCACACGCGG CCGCATATGC GCTGCTCGCG TACTACACGG CTTGGCTCAA GGCGCATCAC
CCGGCCGAAT TCATGGCGGC CAACATGTCG CTCGCCATGG ACGACACCGA CAAGGTGAAG
ATCCTTTACG ACGATGCCCG AGGCAAGAAC GGCCTGACCA TCCTGCCGCC GGATATCAAC
GCCAGCCAGT ACCGTTTTGC ACCGACCGAC GCCAAGACCA TCCGCTACGG TTTGGGCGGC
GTGAAGGGCA GCGGCCAGGG CGCGATCGAA GACATTCTGC GTGCACGCGA AGACGGCCCA
TTCAAGGACT TGTTCGATTT CTGCGAGCGT GTTGACCGTC GCCAGGTCAA TCGCCGGACG
ATCGAGGCGC TGGTGCGGGC CGGCGCCTTC GACAGCCTCA ACGACAACCG CGCGCAACTG
CTCGCGTCGA TCGGCCTGGC CATGGAAGCC GCCGAGCAGA AAGCGGCCGC CGCCAACCAG
GTGTCGCTCT TCGACTTGAT GAGCGGCGAC GATGCCGAGC AGCATCGTCC CGAACTCGTC
GACGAGCCGG CCTGGTCGAC CAAGCGCAAG CTGCAGGAAG AAAAGCAGGC GCTGGGTTTC
TACCTTTCCG GCCACCTGTT CGATGAATAC CGTGACGAGG TGCGCCGCTT CGCACGCACG
ACGCTGGCCG ATCTGGCGCG CGAAGTGACC GACAAGGGCA ACGGGGGCGG CTACGGCAAC
CGCGATGCGC GCAACAAGAC CGTGGCCGGC GTGATCGTAG GCCAGCGCAC CCAGATGACG
CAGCGCGGCA AGATGCTGAT CGTGATGCTC GACGACGGCT CCGCCAGCGA AGCTACCGAG
GTCACGGTCT TCAACGAAGT TTTCGAAGCG AATCGTGCCC TGTTCAAGGA AGACGAAGTG
CTGATCGTGC AGGGTAGCGC CCGCCATGAC ATGTTTACTG GCGGCGTGCG CGTGACAGCC
GAGTCGGTCA TGGACATGAC GCAGGCGCGC GCCAAGTTCG CGCGGGCGAT CCGGCTGTCG
ATGAATGGCG ATTCAACGGC GGCCAAGCTG CGTGATCTGC TCTCGCCGCA TGTGGCGGCC
GATGGCAATG GCGTCTCGGT GCGCATCAAC TACGTCTGCG AGCAGGCGCG CTGCGAAGCG
GTGCTTGGCG ACGCCTGGCG TATTGTTCCG AGCGAAGCGG CGATCGCCGC GCTGCGTCAG
GCGCTGAATG CCGAGAACGT AGCAACGGTG TACGAGTAG
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| Protein sequence | MNSPRFVHLR LHSEYSVVDG NVRLDDAVKA AAKDGMGALA LTDLANAFGL VRFYKEARGK
GVKPIVGADV WITNHDERDK PTRLLLLVRD KQGYLNLCQL LARAWLSNQH RGRAEIAPEW
FDEPGVENAP LAAGLLALSG AMAGDIGVAL ANGNEALARK LATHWSRVFP GAFYIELQRA
GHAGTEAYIQ QAVKLASAMQ LPVVATHPVQ FMTPDDFTAH EARTCIAEGE LLANPRRARR
FTTEQYFKTQ DEMCALFADI PSALANAVQI AQRCNLKLEL GKPKLPRFPT PDGMSLDDYL
VQLAKEGLEK RMEVLFPDEA VRESKRAEYY ARLEFETGTI IKMGFPGYFL IVADFINWAK
NNGVPVGPGR GSGAGSLVAY ALGITDLDPL KYNLLFERFL NPERVSMPDF DIDFCQHGRD
RVIQYVKEKY GKDAVSQIAT FGTMAAKAAV RDVGRVLDLG YNFVDGVAKL IPFKPGKLVT
LEEAKKEEPL LAEREANEEE VKQLLELAQR VEGMTRNVGM HAGGVLIAPG KLTDFCPLYT
QGGEDAGVVS QYDKDDVEAV GLVKFDFLGL TTLTILDWAE RYIRMLDPSK ADWNCSHIPL
TDKKAFDILK TANTVAVFQL ESRGMQGMLK DAKPDRFEDI IALVALYRPG PMDLIPSFCA
RKHGREKVEY PDPRVEPVLK ETYGIMVYQE QVMQMAQIVG GYSLGGADLL RRAMGKKKAE
EMAEHRALFR AGAAKDGLST EKADEIFDLM EKFAGYGFNK SHAAAYALLA YYTAWLKAHH
PAEFMAANMS LAMDDTDKVK ILYDDARGKN GLTILPPDIN ASQYRFAPTD AKTIRYGLGG
VKGSGQGAIE DILRAREDGP FKDLFDFCER VDRRQVNRRT IEALVRAGAF DSLNDNRAQL
LASIGLAMEA AEQKAAAANQ VSLFDLMSGD DAEQHRPELV DEPAWSTKRK LQEEKQALGF
YLSGHLFDEY RDEVRRFART TLADLAREVT DKGNGGGYGN RDARNKTVAG VIVGQRTQMT
QRGKMLIVML DDGSASEATE VTVFNEVFEA NRALFKEDEV LIVQGSARHD MFTGGVRVTA
ESVMDMTQAR AKFARAIRLS MNGDSTAAKL RDLLSPHVAA DGNGVSVRIN YVCEQARCEA
VLGDAWRIVP SEAAIAALRQ ALNAENVATV YE
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