| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1995 |
|---|
| Symbol | |
|---|
| ID | 8019655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 2118663 |
|---|
| End bp | 2120132 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644830781 |
|---|
| Product | ribonuclease, Rne/Rng family |
|---|
| Protein accession | YP_002981947 |
|---|
| Protein GI | 241663587 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.422302 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.703119 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAAG ACATCCTCGT CAATATCACG CCGCAAGAAA CGCGCGTGGC TATCGTCCAG
CAAGCCGCCG TTCAGGAGCT TCACATCGAG CGCACGCTGA CGCGCGGCCT GGTCGGCAAC
ATTTACCTTG GCAAGGTGGT GCGCGTGCTG CCTGGCATGC AGTCGGCCTT CATCGACATC
GGGCTGGAGC GTGCGGCGTT CTTGCATGTG GCTGACATTT GGCACCCGCG CGACGCGAAG
GACGCGCCGC CCACACCGCA AGTCGCCATC GAGAAGACGC TCTTCGAAGG TCAGGCGCTG
ATGGTCCAGG TCATCAAAGA CCCGATCGGC ACCAAGGGCG CACGGCTGTC CACCCAGGTG
AGCATCGCCG GCCGCACGCT GGTGTATCTG CCGCAAGACC CGCACATCGG TATCTCGCAG
AAGATCGGCA ATGAGGCCGA GCGCGAAGCG CTGCGCGCAC GGGTGACCGC CATGGTGCCC
ACCGAAGAAC GCGGCGGTTT CATCGTGCGC ACGATCGCCG AAGAGTCGAC CGACGAAGAA
CTCGCCAACG ACGTCGCTTA CCTGCGCAAG ATCTGGGCGA CCATCCGCCA CAACGCGACA
ACCCTGCCCG CCCCGTCGAT CCTGTATCAG GACCTGAATC TTGCCCAGCG CGTGCTGCGC
GATTTCGTAA CGGACGAAAC GCGCAGCATC CAGGTCGATT CGCGCGAGAA CCACCAGAAG
CTTATCGAAT TTGCGCAGGA ATACACGCCA GCCGTGGTCG AGCGCCTGAC GCATTACACC
GGTGAACGGC CAATCTTCGA CCTGTACAAC ATTGAGGCTG AAGTCGAGCG CGCACTGTCG
CGCCGGGTCG ATCTGAAATC GGGCGGCTAC CTGATGATCG ACCAGACCGA GGCGATGACG
ACCATCGACG TCAACACCGG CGGTTACGTT GGCGCACGCA ACTTCGACGA CACGATTTTC
AAGACCAATC TGGAAGCCGC GCACACCATT GCGCGGCAAC TGCGGCTGCG CAACCTGGGT
GGCATCATCA TCATCGACTT CATCGACATG GAGTCTGCCG AGCATCGCGA TGCGGTGCTC
GCCGAACTGC GCAAGGCGCT GTCGCGCGAC CGTACACGCA TCACGGTCAA CAGCTTTTCG
CAACTTGGGC TGGTGGAGAT GACGCGCAAA CGCACGCGCG AATCGCTCGC GCATGTGCTG
TGCGAGCAGT GCCCGGTATG CCAGGGCAAG GGCCAGGTGA AGACGCCGCG CACGGTGTGC
TACGACATCC TGCGCGAGAT CATGCGCGAG TCGCGGCAGT TCAATCCGCG CGAATTCCGC
ATCCTCGCGT CGCAGTCGGT CATCGACCTG TTCCTGGAAG AAGAAAGCCA GCACCTCGCG
ATGCTGGGCG ATTTCATCGG CAAGCCGATT TCACTGCAGG TGGAATCGTC CGCGGCCAGC
CAGGAGCAGT ACGACATCAT CCTGATGTAG
|
|---|
| Protein sequence | MSEDILVNIT PQETRVAIVQ QAAVQELHIE RTLTRGLVGN IYLGKVVRVL PGMQSAFIDI
GLERAAFLHV ADIWHPRDAK DAPPTPQVAI EKTLFEGQAL MVQVIKDPIG TKGARLSTQV
SIAGRTLVYL PQDPHIGISQ KIGNEAEREA LRARVTAMVP TEERGGFIVR TIAEESTDEE
LANDVAYLRK IWATIRHNAT TLPAPSILYQ DLNLAQRVLR DFVTDETRSI QVDSRENHQK
LIEFAQEYTP AVVERLTHYT GERPIFDLYN IEAEVERALS RRVDLKSGGY LMIDQTEAMT
TIDVNTGGYV GARNFDDTIF KTNLEAAHTI ARQLRLRNLG GIIIIDFIDM ESAEHRDAVL
AELRKALSRD RTRITVNSFS QLGLVEMTRK RTRESLAHVL CEQCPVCQGK GQVKTPRTVC
YDILREIMRE SRQFNPREFR ILASQSVIDL FLEEESQHLA MLGDFIGKPI SLQVESSAAS
QEQYDIILM
|
|---|
| |