| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1990 |
|---|
| Symbol | |
|---|
| ID | 8019650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 2115081 |
|---|
| End bp | 2115989 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644830776 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_002981942 |
|---|
| Protein GI | 241663582 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0408] Coproporphyrinogen III oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0815567 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACCC AAGCCGTCCG CGCCTACCTG CTGGACCTGC AGGATCGCAT CACCACTGCC
GCCAGCGCGC TGGACGGCGG CACGTTCGTC ACCGACGCAT GGGAAAAGCC GCCCACCGAG
CGCCTGCGCG GCAGCGGTCG CACACGCATC CTGGAAGGCG GCACGCTGCT TGAACGCGGC
GGCGTTGGCT TCTCGCATGT ATTGGGCGAC ACCCTGCCCC CTTCGGCGAC GGCCAACCGG
CCCGAATTGG CGGGGCGCGG TTTCGAGGCG ATGGGCGTGT CGCTCGTCTT CCATCCGCGC
AACCCCTACG TGCCGACGGT GCACATGAAT GTGCGCTGCT TCGTCGCCGT GCGCCCCGAT
GCCGACCCCG TCTGGTGGTT CGGCGGCGGC ATGGACCTCA CGCCCTACTA CGGGTTCACC
GAAGACGCCT CGCATTTCCA CCGCACCTGC CAAAGCGCCC TTGCCCCTTA CGGCGACGAG
CTGTATCCGC GCTTCAAGCA ATGGTGCGAC GACTATTTCT ACCTGAAGCA CCGCAAGGAG
GCGCGCGGCG TCGGCGGCGT TTTCTTTGAC GACTTTGCGG AGCTGGGCTT CGAGCGCAGC
TTCGAAATGA TGCGCTCGGT CGGCGACGCC TTCCTGCCCG CCTGGCTGCC CATCGCCGAA
CAACGCCACA CCACACCCTA CGGTGAGCGC GAACGCGCGT TCCAGGCCTA TCGACGTGGC
CGCTATGTCG AGTTCAACCT GGTATTCGAT CGCGGCACGC TGTTTGGCCT GCAAAGCGGC
GGTCGCGCGG AATCGATCCT GATGTCGATG CCGCCGGTGG CCAACTGGCG CTACGACTGG
CAGCCGGAAC CGGGGTCGCC CGAGGCCGCG CTGTACACCG ATTTCCTGCC GGCGCGCGAT
TGGGTATGA
|
|---|
| Protein sequence | MDTQAVRAYL LDLQDRITTA ASALDGGTFV TDAWEKPPTE RLRGSGRTRI LEGGTLLERG
GVGFSHVLGD TLPPSATANR PELAGRGFEA MGVSLVFHPR NPYVPTVHMN VRCFVAVRPD
ADPVWWFGGG MDLTPYYGFT EDASHFHRTC QSALAPYGDE LYPRFKQWCD DYFYLKHRKE
ARGVGGVFFD DFAELGFERS FEMMRSVGDA FLPAWLPIAE QRHTTPYGER ERAFQAYRRG
RYVEFNLVFD RGTLFGLQSG GRAESILMSM PPVANWRYDW QPEPGSPEAA LYTDFLPARD
WV
|
|---|
| |