| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1962 |
|---|
| Symbol | |
|---|
| ID | 8019621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 2086536 |
|---|
| End bp | 2087804 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644830747 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_002981914 |
|---|
| Protein GI | 241663554 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.154783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.857394 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCCGA TTCACCCCGC GGGCGCAGCC AAAACGCCTT CCGCGACCGC CGCTGAAACC
GGTGACAAGG TCACCTCCGT CTTCCTGCAG CCGGGCAAGA TCAGCCTGCC CGCTTCGCCG
CCGCTGTCCT TGTACGTGCA CGTGCCGTGG TGCGTACGCA AGTGTCCGTA CTGCGATTTC
AACTCGCACG CAGAGCCCGA ACAAGGCATT CCGGAAGAAC GCTTTCTGGC TGCCGTGCGG
CAAGACCTGG AGGCCGCGCT GCCGATGGTG TGGGGCCGGC ATGTGCACAC GATCTTCATC
GGGGGCGGTA CGCCGAGCCT GTTGTCGGCG CAAGGGCTAG ACCGCTTGCT GTCGGACATC
CGCATGCTGC TGCCAGTTGA CGCCGACGCC GAGATCACGA TGGAGGCCAA CCCGGGCACC
TTCGAGGCAG AACGCTTCCG TAGCTACCGC GCCAGCGGCG TGAACCGCCT GTCGATCGGC
ATCCAAAGCT TCAACGATGC GCACCTGCAG GCCCTGGGCC GCATCCATAG TGCCGCCGAA
GCGCGCGCCG CCATCGACAT CGCCCGCGCG CATTTCGACA ACATCAACCT CGACCTGATG
TTCGCGCTGC CGGGCCAGAC ACTTGCCGAG TGCGAGGCCG ATGTTGAGGC CGCGTTGTCG
TTCGATACGA ATCACGTGTC GCTGTACCAC CTGACGCTGG AGCCGAACAC CTACTTCGCC
AAGTACCCGC CCGCGCTGCC GGATGACGAC GCGGCGTTTG CAATGCAGGA CTGGATTCAC
GCGCGGTTGG CAGCGGCAGG CTACGAGCAC TACGAGGTGT CGGCATACGC CAAGGCCGGC
AAGCGCTGCA AGCACAACCT GAACTACTGG CAATTCGGCG ATTACCTCGG CATTGGCCCG
GGCGCGCACG GCAAGCTCAG TTTTCCGCAC CGGGTCATCC GCGAGATGCG GCACAAGCAT
CCGGACACGT ATCTGCGCCA GGCCGAGACA GCCGGCGGTG CGGCGGTCAT GCAGGAGCAG
CGCGAAGTCG ACGCTGCCGA CCTGCCGTTC GAGTTCATGC TCAATGCGCT GCGACTGACG
GACGGTTTTC CCGTCACGTT GTTCCAGGAA CGCACGGGCC TGCCGTTGCG CTCCATTGAG
CGACAACTCG ACGTCGCCGA GCAGCGCGGC CTGCTGACGC GCGACCATGT CGCCATCCGC
CTGACCGAGC TGGGGCAACG GTTCCTCAAC GATTTGCAGG AATTGTTCTT GGCCGACGAC
GAAAACTGA
|
|---|
| Protein sequence | MIPIHPAGAA KTPSATAAET GDKVTSVFLQ PGKISLPASP PLSLYVHVPW CVRKCPYCDF
NSHAEPEQGI PEERFLAAVR QDLEAALPMV WGRHVHTIFI GGGTPSLLSA QGLDRLLSDI
RMLLPVDADA EITMEANPGT FEAERFRSYR ASGVNRLSIG IQSFNDAHLQ ALGRIHSAAE
ARAAIDIARA HFDNINLDLM FALPGQTLAE CEADVEAALS FDTNHVSLYH LTLEPNTYFA
KYPPALPDDD AAFAMQDWIH ARLAAAGYEH YEVSAYAKAG KRCKHNLNYW QFGDYLGIGP
GAHGKLSFPH RVIREMRHKH PDTYLRQAET AGGAAVMQEQ REVDAADLPF EFMLNALRLT
DGFPVTLFQE RTGLPLRSIE RQLDVAEQRG LLTRDHVAIR LTELGQRFLN DLQELFLADD
EN
|
|---|
| |