| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1944 |
|---|
| Symbol | |
|---|
| ID | 8019602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2071337 |
|---|
| End bp | 2071822 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644830729 |
|---|
| Product | LysM domain/BON superfamily protein |
|---|
| Protein accession | YP_002981897 |
|---|
| Protein GI | 241663537 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.123188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0308749 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTTTT TTGACTTCAT CAAAGAGGCT GGCGAGAAGC TTTTCCATGG CGCCGCTGCA
GCCACGCCCG CCGATGCGTC AGCAGATGCC GACGCCGCCA AGGCGGCCGA CGATGCCAAG
GGCCAAGCCA TTCAGGACTA CATCGCACAG CAGGGCCTGA GCGCCACGGC GCTGTCGGTG
CAGGTGGAAG GCGATGCAGC CAAGGTGTTT GGCGTCGCCC CCGATCAAGC CACGCGCGAG
AAAATCATCC TGTGTTGCGG CAACGTCGAA GGCATCAAGT CGGTGGATGA CCAGATGTCG
GTCAACACCG AGTCGGAAGA ATCGCAATGG CACACGGTGG AGCGCGGCGA TACGCTGTCG
GCCATCGCCA AGAAGTTCTA CGGCGATGCC AACAAGTACC CCGCCATCTT CGAGGCCAAC
AAGCCGATGC TGTCGAATCC GGACAAGATT TATCCGGGGC AGAAGCTGCG TATTCCGGCG
GCGTGA
|
|---|
| Protein sequence | MGFFDFIKEA GEKLFHGAAA ATPADASADA DAAKAADDAK GQAIQDYIAQ QGLSATALSV
QVEGDAAKVF GVAPDQATRE KIILCCGNVE GIKSVDDQMS VNTESEESQW HTVERGDTLS
AIAKKFYGDA NKYPAIFEAN KPMLSNPDKI YPGQKLRIPA A
|
|---|
| |