| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1930 |
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| Symbol | |
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| ID | 8019587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 2051641 |
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| End bp | 2054229 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644830714 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_002981883 |
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| Protein GI | 241663523 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.931752 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0420074 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGCAG CAGAACGCAT GTCCAACAAA ATCGGCAACC ACCGCACAGT CAAAGCGAGC
AGCAACGCGA TCCCTGACCT ACTGGGACAG CCACAGTTGG AATTCGTGCG CGTCTCGGGC
CGCGAAGCGC TGAGCGAGTT GTTCACCTAC ACAGTGGATC TGCGCCCCGT TTCGTTGGCA
GCCGATCAGT CCATGCTCGA ATCAGATCTA GACGCTGCCA TTGGCCACGA GATGACCTTG
TCCATCGAAC TGGACGGCAT GGGTACCGGC CTGCTCGGTG GTGTTGGTGC GGGTGTGCGA
GAAATCACCG GCCTGATCAC CGCCGTCGAA CTGATCGGCG GCGTGGACAA CAATCGTCTC
TACCGCTACA CCTTGCGCCC CTGGCTTTGG TTGGCCAGTC AGACCTCTGA TTACAAAGCG
TTCCAAAACA AGTCTGTCAT CGACATCCTC GACGAAGTGC TGGCCGATTA CCCGTATTCG
GTGGACAAGC GTCTGGACAC CAGTGTCTTC CCCAAGCTCA TCTGGGAAGT CCAGCACTGC
GAGACCGACG CTCACTTCAT CCAACGTCTC ACCGAAGAAT GGGGTATCAG CTATTTCTTC
GAACACGATG GCAGCCACCA CCGGCTCGTG CTCGTCTCCG AATCCGGCGC CTGGCGCAAA
TTCCCCAGCG GGGCATATCA CGCGCTGTCG ATCTACCCGC AAGGTTTCAA GATCGACCAG
GAGCACCTGA CACGTTTCGA GCCCATCATC CGTCTGCGTA CCGGCAAGGT TACGTTCAAG
GATTACGACC CACGCCAGCC CAAAGCCGAC CTCACCACCA GTGACAGCCT GCCGCGCGAC
ACGCTGTTTT CCGAGTTCGA ACGCTACGAA TACGAACCCG GCCTCTATGA CAGCCGAGAT
GTCGGCAACT TGCACGCTCG CATTCATACG GAAGAGCGGC GCGCCAAGGG GCGACGCATG
CGTGGTGTCG GCAACCTGCG CGGCGTCGCC GCCGGCAACA CCTACCACAT CACCAATCAC
GACCATGACG CGCTGAACCG CGAAGTCCTG ATTGTGAGCA CGGACCTGAT GTTGGAAGAC
GTGGGCATCC ACAGTGGCGG CACCCAGCAA TACACCTGCC GCGTCAGCTT CGAAGCTCAC
CCCACGGACG AAGTCTTCCG TCCAGAACGG ATCGCCCACA AGCGTCGCGT TCAAGGTATC
CAGCGCGCCG TCGTCACCGG TCCCGAGAAC CAAGAGATTT GGACCAACGA CCACGGCTGC
GTCAAAGTCC AGTTCGAATG GGACCGCTAC GGCCAGCACG ACGAGAATTC CTCGCCCTGG
ATCCGCGTGT CCAATGGCTG GTCCGGCGAT CAATTCGGCA CCATGCAAAT TCCTCGTATT
GGTCAGGAGG TCCTGGTCGA CTATCTGAAC GGCGATCCGA ACACGCCGAT CATCGTTGGT
CGCGTACCCA ACCAGCTCAA CACACCGCCG TGGGCGCTGC CGACGCAGCA TGCGTTGTCC
GGCATTGCCA GCAAGGAACT CTTCGGGCGG CGGCGTAACC ATCTTCTGAT GGATGACACC
CAAGGGCAGA TTCAGGCCCA ACTGTCGTCA GACCACCAGA CATCCCAGCT CAACCTGGGC
TACTTGACCG GTGTGCCGGG GCAGCCTGGG CGCAAAGACC CGCGTGGCGA AGGTTTTGAT
CTGCGTACTG ATGGGCGGGG CAGTGTGCGA GGCGCCAAGG GCCTGTTCTT TACCGCAGAA
GGGCAAATCG CTGCCGTGGG TGGCCACTTC ACGCGAGAGG AATTCATCCG CTGCATGCGA
GCAGCGCTTG AGACCGCCGA ATCGTTCGGC AACTACAGCA GTCAGCACGA AGCGCTCAAG
TGCGACACCG ATCCGCAATC CAAGCTCACC CAAGCCATCG AGGACTGGGA TGCTGGCGCC
AACAACCACA AAGACAAGCC AGGGCAAGGG GGGCAACCCA TCATCGGCGC CTACGCGCCG
GCTGGCATGG CCTTCGCCAG CCCCCAAACG ATCACCAGCT ACGCGGGCAA GCACATTGAC
ACCATCTCCA AGCTCAACCA GCAGTACACC GCTGGGCAGC AGTACGTCGT CAATGGGGGT
ACCGGCATCA GCCTGTTCGC CCACAGCGGG GATTGGAAAG GCATTGCCCA CCAGGACCGG
CTCATCTTGC AAGCGCAGAG CAAAGATATT GCGCTCAACG CGAAGACCGA TTTGGTGGCG
ATCGCTACCG AAGGCGCCAT TGTGCTGACA GGCAAGACCA GCATCACGTT CATGAGCGGC
AAGGCCGGGA TTCGCATCGC GGACGGGTGC GTGGACATCT TTGGGCCGAC GCGTGTGCAT
CTGCACACCG CCGACTTTGA TGCGCCGGGA CCGCAGGGGA TCGATGGCGC GCTACCGCAG
TTCGACTCGG GGGATACGGG GCGCAAGTTC CGGCTGATTC GTCCCGCAGA CAACGAACCC
GTAGCGAACC GGTCGTACGA AATCGTCAAG CGAGACGGCA GCGTTATCAA AGGTGTCAGT
AACGCCCTGG GTGAAACAGA ACTGCATGAA TCTCAAGCGG CCGACGTGCT GGCGATCAAG
TTTGGCTAA
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| Protein sequence | MGAAERMSNK IGNHRTVKAS SNAIPDLLGQ PQLEFVRVSG REALSELFTY TVDLRPVSLA
ADQSMLESDL DAAIGHEMTL SIELDGMGTG LLGGVGAGVR EITGLITAVE LIGGVDNNRL
YRYTLRPWLW LASQTSDYKA FQNKSVIDIL DEVLADYPYS VDKRLDTSVF PKLIWEVQHC
ETDAHFIQRL TEEWGISYFF EHDGSHHRLV LVSESGAWRK FPSGAYHALS IYPQGFKIDQ
EHLTRFEPII RLRTGKVTFK DYDPRQPKAD LTTSDSLPRD TLFSEFERYE YEPGLYDSRD
VGNLHARIHT EERRAKGRRM RGVGNLRGVA AGNTYHITNH DHDALNREVL IVSTDLMLED
VGIHSGGTQQ YTCRVSFEAH PTDEVFRPER IAHKRRVQGI QRAVVTGPEN QEIWTNDHGC
VKVQFEWDRY GQHDENSSPW IRVSNGWSGD QFGTMQIPRI GQEVLVDYLN GDPNTPIIVG
RVPNQLNTPP WALPTQHALS GIASKELFGR RRNHLLMDDT QGQIQAQLSS DHQTSQLNLG
YLTGVPGQPG RKDPRGEGFD LRTDGRGSVR GAKGLFFTAE GQIAAVGGHF TREEFIRCMR
AALETAESFG NYSSQHEALK CDTDPQSKLT QAIEDWDAGA NNHKDKPGQG GQPIIGAYAP
AGMAFASPQT ITSYAGKHID TISKLNQQYT AGQQYVVNGG TGISLFAHSG DWKGIAHQDR
LILQAQSKDI ALNAKTDLVA IATEGAIVLT GKTSITFMSG KAGIRIADGC VDIFGPTRVH
LHTADFDAPG PQGIDGALPQ FDSGDTGRKF RLIRPADNEP VANRSYEIVK RDGSVIKGVS
NALGETELHE SQAADVLAIK FG
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