Gene Rpic12D_1918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1918 
Symbol 
ID8019575 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp2033596 
End bp2036130 
Gene Length2535 bp 
Protein Length844 aa 
Translation table11 
GC content67% 
IMG OID644830702 
Productprotein of unknown function DUF214 
Protein accessionYP_002981871 
Protein GI241663511 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00532118 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCACGTT TCTCCGTCTG GACCCAAGCC CTGCGCATGC TGCGCCGCGA CTGGCGCGCC 
GGTGAACTGA ACCTCCTGCT CGTCGCCCTG GTGCTGGCCG TGGCGGCGCT GGCGTCCGTC
AGTTTCCTGG CCGATCGCAT GCATGCGGGC CTCGAGCGCG ATGCGCGGCA GTTAATCGGG
GCGGATGTGC TTGTCGTCTC CGATCAGCCG CTGCCGCCCG ACATCGAGGC GCATGCGCGT
GCAAGCGGCT TGCAAGTCAC GCATACCGCC ACCTTCCCCA GCATGGCCAG CACATTGGCG
AAGGGCGCGT CGGGCGAACC GGTATCGCAA CTCGCTGCCA TCAAGGCCGT CGACATGGGC
TACCCGCTGC GCGGCACCCT CAAGGTGGGC GATGACGGGC GAGATACCGT GGGCGCGCCA
ATCCAGGGCG TTCCCGCCGC AGGCACGGTG TGGGTGGACG CACCGCTGCT CGAAGCGCTC
GGCATTCGCG TGGGCGATGC GATCCGCCTG GGCAAGCGCA CCTTCAAGGT CGCTCACGTC
ATCACCCAGG AGCTTGATCG CGGCGCGGGC TTCATGAATT TCGCCCCCCG GGTGATGCTG
TCGATGTCAG ACCTGGGCTC GACAGGCCTC GTCACCTACG GCAGCCGCGT AACGTACCGC
TTGCTGGTCG CTGGCCCGGA TGCCGCTGCC GGCGCATTCC ACACTTGGAT CGAGAACGAA
GCGAAGACGC GCCAGTTGCG TGGCGTGCGC GTTGAATCGT TGCAGAACGG CCAGCCGCAG
ATGCGCGAAA CGCTGGACCG CGCCGAGCGC TTCCTCTCTC TCGTCGCCTT GCTGGCGGCC
ATGATTGCCG CAGTGGCGAT TACGATGGCC GCGCGCCGCT ACACCGCGCG CCATACCGAT
GCGGTGGCCG TCATCAAATG CCTTGGGCTC GAGCAACGGC AGATTCTCGG CACGTTCGCA
CTGGAGTTCT TGCTGATCGG CGTGATGGGT TCGGCGGTGG GCGTGGCGCT GGGTTACGGC
GCGCACTGGC TGTTGCTGGC GTCGCTGGGC GACCTGGTCA CGGTGACGTT GCCTGCGCCA
TCCGCCTGGC CTGCGGTGGT GGGCGTGACG GCGGGGCTGG TGTTGCTGAT CGGTTTTGCC
GTGCCACCCT TGCTGAGCCT CGTGCGCGTG GCGCCGCTGC GCGTGCTGCG GCGCGACGTG
GCTGAGCGTG CCGTTGCCGC TTGGATCGGC TATGCGCTGG GCGGGGCGGC GTTCTTCGCG
CTCCTCGTGG TGTCAGCGCG CGACGTCAAG CTTGGGGCGC TGACCGCCGC GGGGTTTGCC
TGCGCCATCG TCGTGTTTGC GCTGCTGGCA GCCGGCGGAT TGCGCGCCCT GGCGGTGTCC
CTGGGGCGGG GTCGCGCGCT CAGCGTGGGG TGGCGCTTTG CACTGGCCGT ACTGGAGCGC
CGTCGCGGCG TGAGCGTGCT GCAGACGGTG GCGCTTGCGG TCGGCCTGAT GGCACTGCTG
CTGCTCGCCA TGACGCGCAA TGATCTGATC CGCTCGTGGC ACAACGCCAC CCCGGCCGAT
GCGCCCAACC GGTTCATCAT CAATATCCAG CCCGATCAGA TGCACGCGGT GGCGCAGGCC
CTCGCCCAAG CCGGCGTGGC GGACCCGAAG CTCTACCCGA TGGTGCGCGG GCGCCTGACG
CGGGTGAATG GTCAGGTGAT CGACCGCCAG ACCTATGCCG AATCGCGCGC CCGCAACCTG
GTCGAACGCG AATTCAACCT GTCGTACGCG ACCACGCAGC CGCCTGAAAA TCGCATCGTT
TCCGGACAGT GGTTCAGAGG ACAAAAGCCC GAGGCCTCGG TGGAGGAGGG CATTGCCAAG
ACGCTCAATC TCCATCTGGG TGACGTGCTG CGCTTCGATG TCGCGGGGCA GACGGTGGAT
GCGCCCATCA CGTCATTGCG CAAGCTCGAC TGGAGTTCGA TGCGCGTGAA TTTCTTTGTG
ATCCTGCCGC CCGTGGCGCT GCGCGACATG CCGCAGACGT ACGTGACCGC GTTCCGCATT
CCCGCCGGGC AGGCCGATCT GCCGGCTAAG CTAGTGCGCG AGTTTCCGAA CCTCACGGTG
GTCGATACCG AACTGATCTT GCAGCAGGTG CAGGGCGTGC TGGACCAGGT GACGGCGGCG
GTGGAATTCC TCTTCGTCTT TACGCTCGCG GCGGGTGTCC TGGTGTTGTA TGCCGCGCTC
TCCGGTTCGC GCGACGAGCG CCTGCGCGAT GCCGGTGTGC TGCGCGCCCT CGGTGCTGGC
TCCGGTGTGG TACGTCAGAC GCAGTACGCA GAAGTGCTGA TCGTTGGTGG CCTCGCCGGG
CTGATGGCGG GCTTGGGCGC GATCGCCATC GGCTGGGTGC TGTCGGCGTA CGTCTTCGAT
TTTCCGTATC GTTTCAACCC TGCCATCCTG CCGGTGGGCA TCGTGAGCGG CATGGCGTGC
GCCTTTATTG GCGGCTGGCT GGGCTTGCGC GACGTGCTGC GCCGCCCCGC CATGGCAACG
CTCCGCGATG CATGA
 
Protein sequence
MSRFSVWTQA LRMLRRDWRA GELNLLLVAL VLAVAALASV SFLADRMHAG LERDARQLIG 
ADVLVVSDQP LPPDIEAHAR ASGLQVTHTA TFPSMASTLA KGASGEPVSQ LAAIKAVDMG
YPLRGTLKVG DDGRDTVGAP IQGVPAAGTV WVDAPLLEAL GIRVGDAIRL GKRTFKVAHV
ITQELDRGAG FMNFAPRVML SMSDLGSTGL VTYGSRVTYR LLVAGPDAAA GAFHTWIENE
AKTRQLRGVR VESLQNGQPQ MRETLDRAER FLSLVALLAA MIAAVAITMA ARRYTARHTD
AVAVIKCLGL EQRQILGTFA LEFLLIGVMG SAVGVALGYG AHWLLLASLG DLVTVTLPAP
SAWPAVVGVT AGLVLLIGFA VPPLLSLVRV APLRVLRRDV AERAVAAWIG YALGGAAFFA
LLVVSARDVK LGALTAAGFA CAIVVFALLA AGGLRALAVS LGRGRALSVG WRFALAVLER
RRGVSVLQTV ALAVGLMALL LLAMTRNDLI RSWHNATPAD APNRFIINIQ PDQMHAVAQA
LAQAGVADPK LYPMVRGRLT RVNGQVIDRQ TYAESRARNL VEREFNLSYA TTQPPENRIV
SGQWFRGQKP EASVEEGIAK TLNLHLGDVL RFDVAGQTVD APITSLRKLD WSSMRVNFFV
ILPPVALRDM PQTYVTAFRI PAGQADLPAK LVREFPNLTV VDTELILQQV QGVLDQVTAA
VEFLFVFTLA AGVLVLYAAL SGSRDERLRD AGVLRALGAG SGVVRQTQYA EVLIVGGLAG
LMAGLGAIAI GWVLSAYVFD FPYRFNPAIL PVGIVSGMAC AFIGGWLGLR DVLRRPAMAT
LRDA