| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1868 |
|---|
| Symbol | |
|---|
| ID | 8019524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1984413 |
|---|
| End bp | 1985582 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644830651 |
|---|
| Product | urea ABC transporter, permease protein UrtC |
|---|
| Protein accession | YP_002981821 |
|---|
| Protein GI | 241663461 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.514988 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.284901 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGGA CCAAGTTCTC TCTCGATATT CCGGCGCGCA TGCCGCTGCT GTCGCGGCGC
GGGTGGTCTG CGCTGGTGCT CGTATCGCTC ATCGTGTGCA TTGGCGCGCC GGTGTGCGCG
CTGCTTGTGC CGGAGGGCAG CCCGCTGCAT CTGTCGGCGT ATGCGCTCAC GCTCGTCGGC
AAGATCATGT GCTATGCGCT GGCGGCGCTG GCGCTTGATC TGGTGTGGGG CTATTGCGGC
ATCCTGAGCC TAGGCCACGG GCTGTTCTTC GCGCTGGGCG GTTACGGCAT GGGCATGTAC
CTGATGCGCT CCATCGGTCG CGAAGGCGTG TACAAGAGCG ATCTGCCGGA CTTCATGGTC
TTCCTCGACT GGAAGGAGCT GCCCTGGTTC TGGCACGGCA CCGAGCACTT TGCCTGGGCC
ATGCTGCTGG TGATTCTGGT GCCCGGCGTG CTGGCGTGGC TGTTCGGCTT CTTCGCCTTC
CGCTCACGCG TCAAGGGCGT GTACCTGTCG ATCATCACGC AGGCCATGAC GTACGCGGCC
ATGCTGCTGT TCTTCCGTAA CGAGACGGGC TTTGGCGGCA ACAACGGCTT TACCGATTTC
AAACGCATTC TCGGATTCCC GATCTCGGCG TTGCCTACGC GCACCGTGCT CTTCGTGGCG
ACGTTCGTGG CGCTCGTGCT GGCGTTCATC GCCTGCCGCG CCATCGTCAC GTCCAAGTTC
GGCCGCGTGG TCACGGCCAT TCGCGATGCC GAAGCGCGCG TGATGTTCTC CGGCTACAAC
CCGCTCGGCT ACAAGCTGTT CGTGTGGACG TTCTCGGCCG TGCTGTGCGG CATCGCAGGT
GCGCTTTACG TGCCGCAGGT CGGCATCATC AACCCGGGCG AGATGTCGCC GGGCAACTCC
ATCGAGATGG CGGTGTGGGT GGCCGTGGGC GGACGCGGTA CGTTGATCGG CCCGATCATC
GGTGCGTTCC TCGTCAACGG GGCCAAGACG TTGCTGACCG CATGGGTGCC GGAATACTGG
CTGTTCGTGC TCGGGGCGAT CTTCGTACTG GTGACGCTGT ATCTGCCGAA CGGTGTGCTG
GGCCTGATGA GCAAGCTGCG CATGAAAAAG CGGGCGCCCG CGCAAGCCAA GGCGCATGAA
GCCGCGACCG TCACCGGAGA TCACGCATGA
|
|---|
| Protein sequence | MTRTKFSLDI PARMPLLSRR GWSALVLVSL IVCIGAPVCA LLVPEGSPLH LSAYALTLVG
KIMCYALAAL ALDLVWGYCG ILSLGHGLFF ALGGYGMGMY LMRSIGREGV YKSDLPDFMV
FLDWKELPWF WHGTEHFAWA MLLVILVPGV LAWLFGFFAF RSRVKGVYLS IITQAMTYAA
MLLFFRNETG FGGNNGFTDF KRILGFPISA LPTRTVLFVA TFVALVLAFI ACRAIVTSKF
GRVVTAIRDA EARVMFSGYN PLGYKLFVWT FSAVLCGIAG ALYVPQVGII NPGEMSPGNS
IEMAVWVAVG GRGTLIGPII GAFLVNGAKT LLTAWVPEYW LFVLGAIFVL VTLYLPNGVL
GLMSKLRMKK RAPAQAKAHE AATVTGDHA
|
|---|
| |