| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1861 |
|---|
| Symbol | ureC |
|---|
| ID | 8019517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1978762 |
|---|
| End bp | 1980480 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644830644 |
|---|
| Product | urease subunit alpha |
|---|
| Protein accession | YP_002981814 |
|---|
| Protein GI | 241663454 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0804] Urea amidohydrolase (urease) alpha subunit |
|---|
| TIGRFAM ID | [TIGR01792] urease, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.523756 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTCA ACATCACCCG CCGCGCCTAT GCGGAAATGT TCGGCCCCAC GACCGGCGAC
CGCGTCCGCC TGGCCGATAC CGAACTCATC GTCGAAGTCG AACGCGACTT CACCGTCTAC
GGCGAGGAAG TGAAATTCGG CGGCGGCAAG GTCATCCGCG ACGGCATGGG ACAGAGCCAG
CGCGAATCGA AAGACTGCGC TGACACCGTC ATCACCAACG CGCTGATCAT CGACCACTGG
GGCATCGTCA AGGCTGACAT CGGCCTGAAG CACGGGCGCA TCTCGGCGAT CGGCAAGGCG
GGCAATCCGG ACATCCAGCC CGGCGTGACC ATCGTCATCG GCCCCGGCAC CGAGATCATC
GCGGGCGAGG GCATGATCGT CACCGCCGGC GGCGTCGACT CGCACATCCA CTTCATCTGC
CCGCAGCAGA TCGACGAAGC GCTCAACAGC GGCGTGACGA CGATGATCGG CGGCGGCACG
GGCCCCGCCA CCGGCACGTA CGCCACCACC TGCACGCCGG GCCCGTGGTA CATGCAGCGC
ATGCTGCAGG CCGCAGATGC GTACCCGATG AACATCGGCT TCCTGGGCAA GGGCAACGGC
AGCCTGCCGG GCGCGCTGCG CGAGCAGATC GACGCAGGCG CCATCGGCCT GAAGCTGCAC
GAAGACTGGG GCTCCACGCC CGCCGCCATC GACTGCTGCC TGGGCGTGGC CGACGACACC
GATACGCAGG TCGCCATCCA CACCGATACG TTGAACGAAT CGGGCTTCGT TGAAGCGACC
GTCGCTGCGT TCAAAGGCCG CACGATCCAC ACGTATCACA CCGAAGGCGC GGGCGGCGGA
CACGCACCCG ACATCATTCG CGTGTGCGGT GAATCGAACG TGCTGCCGTC GTCCACCAAC
CCGACGCGGC CGTTCACCGT CAACACGCTG GACGAGCACC TCGACATGCT GATGGTGTGC
CATCACCTCG ATGCGTCCAT CGCCGAAGAC ATTGCCTTTG CCGAGAGCCG CATCCGCCGC
GAGACCATCG CCGCTGAAGA CATCCTGCAC GACTTCGGCG CGTTCTCCAT GATCTCCAGC
GACTCGCAGG CCATGGGGCG CGTGGGCGAA GTCGTGCTGC GTACGTGGCA GACCGCACAC
AAGATGAAGG TGCAGCGCGG CAAGCTGGCT GGCGACCCGA ACGATGCGCG GGGCGGGCAT
GACAACTTCC GCGTCAAGCG GTACGTGGCC AAGTACACGA TTAACCCCGC ACTCACGCAC
GGCATCGCGC ACGAGGTGGG CTCGGTTGAA GTCGGCAAGT GGGCAGACCT GGTGCTGTGG
AAGCCGGCGT TCTTTGGTGT GAAGCCGAGC CTAATCCTCA AGGGCGGAAT GATTGCTTCT
GCGGCGATGG GGGATGCGAA TGCGTCGATC CCGACACCGC AGCCGGTGCA CTATCGGCCG
ATGTTCGGGT CGGCGGGTGG GGCGCTGGGG CGGTCTTCGT TGAGCTTTCT GTCGCAGTCG
GCTGCTGCGG CTGGAGTGGC GGAGCAGTAC GGGCTTGCCA AGACCACCGC GGTGGTCAAG
GGTACGCGTA CTGTCAGCAA GGCGGACATG ATTCATAACG ACTGGCAGCC TCACATTACC
GTTGATCCGG AGACGTATCA GGTGGTGGCG GATGGGACTG TGTTGACTTG TGAGCCGGCG
GAGGTGTTGC CGATGGCGCA GAGGTATTTT TTGTTTTAG
|
|---|
| Protein sequence | MTLNITRRAY AEMFGPTTGD RVRLADTELI VEVERDFTVY GEEVKFGGGK VIRDGMGQSQ
RESKDCADTV ITNALIIDHW GIVKADIGLK HGRISAIGKA GNPDIQPGVT IVIGPGTEII
AGEGMIVTAG GVDSHIHFIC PQQIDEALNS GVTTMIGGGT GPATGTYATT CTPGPWYMQR
MLQAADAYPM NIGFLGKGNG SLPGALREQI DAGAIGLKLH EDWGSTPAAI DCCLGVADDT
DTQVAIHTDT LNESGFVEAT VAAFKGRTIH TYHTEGAGGG HAPDIIRVCG ESNVLPSSTN
PTRPFTVNTL DEHLDMLMVC HHLDASIAED IAFAESRIRR ETIAAEDILH DFGAFSMISS
DSQAMGRVGE VVLRTWQTAH KMKVQRGKLA GDPNDARGGH DNFRVKRYVA KYTINPALTH
GIAHEVGSVE VGKWADLVLW KPAFFGVKPS LILKGGMIAS AAMGDANASI PTPQPVHYRP
MFGSAGGALG RSSLSFLSQS AAAAGVAEQY GLAKTTAVVK GTRTVSKADM IHNDWQPHIT
VDPETYQVVA DGTVLTCEPA EVLPMAQRYF LF
|
|---|
| |