Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1844 |
Symbol | |
ID | 8019500 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 1963578 |
End bp | 1965086 |
Gene Length | 1509 bp |
Protein Length | 502 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644830627 |
Product | 3-hydroxy-acyl-CoA dehydrogenase |
Protein accession | YP_002981797 |
Protein GI | 241663437 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.865565 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00599728 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCAGACTA TCGGGATTGT GGGCACCGGC GCCATGGGGC GAGGCATTGC ACAGATCGCG GCCCAGGCAG GTTTGCGCGT CAAACTGTTC GACGCCAATC CGCAAGCCGT GGAAGCGGCG CGCACTGCAC TGGCCGATAC GCTCGCCAAG CTTGCTTCCA AGGGCAAGCT CACAGCGGAT GACGCCGACG CCACCGTCGC GCGGCTCGTT CCTGCGGGCG CGCTCACCGA TCTGGCCGAC TGCGATCTCG TGGTCGAGGC CATCGTCGAG AAGCTTGACG TCAAACGCGA CCTCTTCCGT CAGCTAGAAG ACATCGTCCG CGCGGATGCC ATCCTGGCGT CGAATACATC ATCACTCTCG ATTACCGCGA TTGCCGCGAC ATGCAAGCAC CCCGAACGCG TCGCGGGCTT TCATTTCTTC AATCCGGTGC CGCTGATGAA GGTGGTCGAA GTCATCGACG GCCTGCGCAG CGCGCCCGCC ACCGGTGATG CCCTAGCCGC ACTCGCCCAG CGCATGGGGC ACACCGCCGT GCGCTGCATC GACATGCCGG GCTTCATCGT CAACCACGCC GGGCGCGGCA TGAATACCGA AGGGCTGCGC GTGGCGCAGG AAAGTGTGGC GGCCTATGCG GACATCGACG CCATCATGCG CGAGCACGCC GGCTTCCGCA TGGGGCCGTT CGAGTTGATG GACCTCACAG GGCTGGACGT TTCGCACCCG GTGATGGAAT CGGTCTACCG CCAGTTCTAC GACGAGCCGC GCTATCGTCC GTCGCAGATC ACAGCGGTTC GCTTTGCTGG CGGCATTCTT GGCCGCAAGA CGGGCGAAGG TTTCTATCGT TATCCGGATG GACAGAAACA GGTGCCGGCT GAAGCGCCCG CCCCGTCTGC GCGCCCGACT TCGGTGTGGA TCAGCCGCGC GCATGACGCC GGCCACGCCG CAGCGCAGCG CCTGTTGCTC GATCTGGGCA TCACGCCCGA AGCCGGTCCC AAACCGTCCG CCGACGCATT GGTCATCGTC ACGCCGCGCG GGCTGGATGC CACGGCCTGC GTGGCCGCCG AGGGGCTCGA CGCACGCCGC ACCGTGGCGC TCGACACGCT CTATCCGTTT GCCGCCACCA AGCGCCGCAC GCTGATGACC ACACCCGCCA CCGATGCGGC CTACCGCGAT GCCGCACACG GCTTGTTCGC CTCCGACGGC GTGCCGGTCA CGGTGATCCG CGATTCGGGT GGCTTTGTCG CGCAGCGCAT CGTCGCATGC ATCGTCAACA TCGCGTGCGA TATCGCACAG CAGCGCATTG CCACGCCCAC CGACATCGAC CTCGCCGTCA CGCTGGGACT CGGTTATCCC AAAGGGCCGC TGGCACTCGG CGATACGCTG GGCACGAACG CCATCCTGGA AATTCTGCAG AACCTCTACG CGCTCTATGG CGACCCGCGT TATCGCCCGA GCCCGTGGCT GCTGCGCCGT GCCCGTCTGG GCATGTCGCT GCTCACGCCT GATGCCTGA
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Protein sequence | MQTIGIVGTG AMGRGIAQIA AQAGLRVKLF DANPQAVEAA RTALADTLAK LASKGKLTAD DADATVARLV PAGALTDLAD CDLVVEAIVE KLDVKRDLFR QLEDIVRADA ILASNTSSLS ITAIAATCKH PERVAGFHFF NPVPLMKVVE VIDGLRSAPA TGDALAALAQ RMGHTAVRCI DMPGFIVNHA GRGMNTEGLR VAQESVAAYA DIDAIMREHA GFRMGPFELM DLTGLDVSHP VMESVYRQFY DEPRYRPSQI TAVRFAGGIL GRKTGEGFYR YPDGQKQVPA EAPAPSARPT SVWISRAHDA GHAAAQRLLL DLGITPEAGP KPSADALVIV TPRGLDATAC VAAEGLDARR TVALDTLYPF AATKRRTLMT TPATDAAYRD AAHGLFASDG VPVTVIRDSG GFVAQRIVAC IVNIACDIAQ QRIATPTDID LAVTLGLGYP KGPLALGDTL GTNAILEILQ NLYALYGDPR YRPSPWLLRR ARLGMSLLTP DA
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