Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1842 |
Symbol | |
ID | 8019498 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 1961622 |
End bp | 1962794 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644830625 |
Product | putative aminotransferase |
Protein accession | YP_002981795 |
Protein GI | 241663435 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00218837 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACCACTG TTGAATCGCT CGCACCCATC GCACCGCCGC CGTCGCGGCT GCCGAATGTC GGCACCACCA TCTTCACCGT GATGTCTGCG CTGGCCGTGG AAAAGCAGGC CGTCAACCTG GGCCAGGGCT TTCCTGATTT CGATTGCGAC CCGCGCATCG TCGATGCGGT GTCCGACGCC ATGCGCGCCG GCCTGAACCA ATACCCGCCG ATGACGGGCG TGCCCGCCCT GCGCCAGGCC ATCGCCGCCA AGATCGCCAA TCTGTACGGC CACGCTTACG ATGCCGACCG CGAGATCACC ATCACCGCCG GCGCCACGCA GGCGCTGCTG ACGACCGTGC TGTGCTGCGT GCATCCCGGC GATGAAGTCA TCGTCTTCGA GCCGACGTAC GACAGCTACA TTCCGTCGAT TGAACTGGCG GGCGGCAAGG TCGTGCCAAT CACGCTGAAC GCGCCGGACT TTCGCATCCC GTTCGACACG CTGGCGGCGG CCATCACGCG GCGCACGCGC CTGATCATGC TCAACACGCC GCACAACCCG ACCGGCACGG TCTGGCATGC GGACGACATG CGCAAGCTCG CCGAGATCCT CGCGCCCACC AACGTGCTGC TGCTCTCCGA TGAGGTGTAC GAGCACATGG TGTACGACGG CGTGCCGCAT GCCTCGGTGG CGCGCATTCC CGAGCTGGCG CATCGCGCTT TCGTGGTGTC GAGCTTCGGC AAGACGTATC ACGTGACGGG CTGGAAGGTC GGCTACGTGG CCGCCCCCGC CGCGCTGATG GCGGAATTCC GCAAGGTGCA CCAGTTCAAC GTGTTCACCG TCAACACGCC GGTGCAGCAC GGCCTGGCGA ACTACATGGC GGATCCGCGC CCGTATCTGG AGTTGCCGGC GTTCTACCAG CGCAAGCGCG ACCTCTTCCG CGCTGGGCTG GAGAACACGC GCTTCAAGCT TCTGCCCTGC CAGGGGACGT ACTTCCAGTG CGTGGATTAC AGCGCAATCT CCGATCTGCC CGAGGCCGAG TTCGCCAAGT GGCTGACGAG CGAGATTGGC GTGGCGGCAA TTCCCGTGTC GGCGTTCTAC TCGCAGCCGC ACGAATCGGG CGTGGTGCGC TTCTGCTTCG CCAAAAAAGA CGAAACGCTC CAGGTTGCGC TGGAGCGTTT GTCGAAGGTG TAA
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Protein sequence | MTTVESLAPI APPPSRLPNV GTTIFTVMSA LAVEKQAVNL GQGFPDFDCD PRIVDAVSDA MRAGLNQYPP MTGVPALRQA IAAKIANLYG HAYDADREIT ITAGATQALL TTVLCCVHPG DEVIVFEPTY DSYIPSIELA GGKVVPITLN APDFRIPFDT LAAAITRRTR LIMLNTPHNP TGTVWHADDM RKLAEILAPT NVLLLSDEVY EHMVYDGVPH ASVARIPELA HRAFVVSSFG KTYHVTGWKV GYVAAPAALM AEFRKVHQFN VFTVNTPVQH GLANYMADPR PYLELPAFYQ RKRDLFRAGL ENTRFKLLPC QGTYFQCVDY SAISDLPEAE FAKWLTSEIG VAAIPVSAFY SQPHESGVVR FCFAKKDETL QVALERLSKV
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