| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1807 |
|---|
| Symbol | |
|---|
| ID | 8019463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1924486 |
|---|
| End bp | 1924983 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644830591 |
|---|
| Product | Colicin V production protein |
|---|
| Protein accession | YP_002981761 |
|---|
| Protein GI | 241663401 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1286] Uncharacterized membrane protein, required for colicin V production |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCGA CGTTCTTTGA CTACGGTGTG CTGTTCATCA TCGTCACGTC GGCGCTGATC
GGGCTGTTTC GTGGGTTGAT TCGCGAGGTG CTGGCGCTGC TGGGGTGGTT GTTTGCGGCT
TGGGTGGCAT ACACATTTTC GGGGGTGGCC GCGGGCTGGA TGCCGGAAAC GCTGCCTGGC
GGCCCGGTCG CACGCACTAT TCTCGGATTC GTCCTACTGT TTATCGTGAC GGTGATTGCA
ACGTCGCTGG TGGGTGCGCT GCTTTCGGCG GTGTTGGCCA GCGCGGGGCT CAAGCCGGCA
GATCGCGGCC TGGGGATGGT GTTCGGATTG GCACGCGGTG GCGTGATCAT CCTCGTGTTG
ATGACGGTGG CCGGCTTTAC CAGTCTGCCC GAGCAACCGT TCTGGCGCGA TGCGATCACG
CGGCCCTATG CGGAGCAGGC AGCACAAGCT GCCAAGCCGT TGTTGCCACC GGATGTCGCA
AAGTATGTTC ACTATTGA
|
|---|
| Protein sequence | MQPTFFDYGV LFIIVTSALI GLFRGLIREV LALLGWLFAA WVAYTFSGVA AGWMPETLPG
GPVARTILGF VLLFIVTVIA TSLVGALLSA VLASAGLKPA DRGLGMVFGL ARGGVIILVL
MTVAGFTSLP EQPFWRDAIT RPYAEQAAQA AKPLLPPDVA KYVHY
|
|---|
| |