Gene Rpic12D_1794 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1794 
Symbol 
ID8019450 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1916055 
End bp1916465 
Gene Length411 bp 
Protein Length136 aa 
Translation table11 
GC content61% 
IMG OID644830578 
ProductBiopolymer transport protein ExbD/TolR 
Protein accessionYP_002981748 
Protein GI241663388 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0946301 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.726356 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTTCG GATCTTTCGA CAACGATGAC GAGGTGATGA GCGAGATCAA CATGACGCCG 
CTGGTCGACG TCATGCTGGT GCTGCTGATC ATCTTCATCA TCACCATTCC GGTGATCAAC
CACGCGGTGA AGATCGACCT GCCGCGCGCG TCCAACAAAC CCGACGACGC CAAGCCACAA
AGCGTGAACG TCGAGATCAA CGCAGAAGGC CAGGTGTTCT GGAACAACCA GCCGGTCGAC
GAGGCCACGC TGCAAGCCGA CATCGCGCAG GCCGCGCAAC AGCAGCCGCA ACCTGAGATG
CACTTGCGCG CAGACCGCAA CGTGCGCTAC GAGCGCGTGG CGCAGGTCAT GGCGTCCATC
CAGCGCGGCG GCCTCTCGCG CATCGGCTTT GTAACAGAGC CGCAGCACTA A
 
Protein sequence
MSFGSFDNDD EVMSEINMTP LVDVMLVLLI IFIITIPVIN HAVKIDLPRA SNKPDDAKPQ 
SVNVEINAEG QVFWNNQPVD EATLQADIAQ AAQQQPQPEM HLRADRNVRY ERVAQVMASI
QRGGLSRIGF VTEPQH