Gene Rpic12D_1793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1793 
Symbol 
ID8019449 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1915317 
End bp1916045 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content64% 
IMG OID644830577 
ProductMotA/TolQ/ExbB proton channel 
Protein accessionYP_002981747 
Protein GI241663387 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0811] Biopolymer transport proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.418463 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGAAC TCGGTCTTTC CCACCTCTGG ACACAAGGCG ACATCGTCAC CCGCGCCACG 
GCGATTCTGC TGCTCATCAT GTCGCTCGCC TCGTGGATCG TCATCTTCAC CAAGGCGTGG
GACATCGTGC GTCTGAAGTC GATGGCACAA GGCGCTGAAA AGCGTTTCTG GCACTCGGAT
GATTTCGATC ACGCCATACA GACGCTCGGC TCGCCCAAGG ACAACCCTTT CCACACGCTC
GCACAAACGG GCCGGGAAGC GGCGCAGCAT CACCGCGCCA GCCAACCGCA GCTGCATGAT
GTGATGGACA TTTCCGACTG GATCACCCGC TCGCTCAAGA GCGCCATCGA TGAGGCCGTG
GGGCAAATGC AATCGGGCTT GGCCGTGCTG GCATCGGTCG GCTCGACCGC ACCGTTCGTC
GGTCTGTTCG GCACGGTGTG GGGCATCTAT CACGCCCTGC TCGGTATCGG TGCAGTGGGC
GTGCCGACCA TCGACAAGGT GGCCGGCCCC GTGGGCGAAT CGCTCATCAT GACCGCCTTC
GGCCTGGCTG TGGCCATTCC GGCGGTGCTC GGCTACAACG CCCTCACGCG CGGCAACAAG
GCCATCATCG CCAAGCTGAA CCGCTTTGCG CACGACCTGC ACGCCTACTT CGTGACCGGT
GCGCGCCTGC GCCCGGGCGC CTCGCGTGAA GACGCCGGCG TGCGCCTGAC TGCTGTCAAG
CAGCAGTAA
 
Protein sequence
MQELGLSHLW TQGDIVTRAT AILLLIMSLA SWIVIFTKAW DIVRLKSMAQ GAEKRFWHSD 
DFDHAIQTLG SPKDNPFHTL AQTGREAAQH HRASQPQLHD VMDISDWITR SLKSAIDEAV
GQMQSGLAVL ASVGSTAPFV GLFGTVWGIY HALLGIGAVG VPTIDKVAGP VGESLIMTAF
GLAVAIPAVL GYNALTRGNK AIIAKLNRFA HDLHAYFVTG ARLRPGASRE DAGVRLTAVK
QQ