| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1789 |
|---|
| Symbol | |
|---|
| ID | 8019445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1909356 |
|---|
| End bp | 1910372 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644830573 |
|---|
| Product | peptidase U32 |
|---|
| Protein accession | YP_002981743 |
|---|
| Protein GI | 241663383 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0826] Collagenase and related proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0977895 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.65694 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAGA ACGCTTCCCC CATTGAACTC GTGGCGCCCG CCGGCAGCCT GGCCGCGCTC
AAGGCGGCCG TGGAGGCCGG GGCCGATACC GTCTACCTCG GCTTGAAGAA TGCGACCAAC
GCGCGCAACT TCGCCGGCCT GAACTTTACC GAGAGCGACA TCCGAGCCGG CGTCGAATTT
GCGCATCGGA AAGGGCGCCA GGTGCTGTTT GCCATCAACA CGTTTCCGCA GCCTGGCCGT
GCCATCGAGT GGCACATGGC AATCGATGCT GCCTACATGC TGGGCGCCGA TGCCGTGATC
CTGGCCGACC CCGGGCTGAT GGCCTATGCA TGCGACCGCT ATCCCAACCT TCGGCTGCAT
CTATCCGTGC AGGGTTCGGC AACGCATGCC GACGCCATCG AGCTCATGCG TGAGCAGTTC
GGCATCCACC GCGCCGTCCT GCCGCGTGTG CTGACCTTGA CCGAAGTCGA ACGTGTGATC
CAGCAGACTT CGGTGCAGAT CGAGGTATTC GGTTTTGGCA GCCTGTGCGT GATGGCTGAA
GGTCGTTGCC TGCTGTCGTC GTATGCCACG GGGGATTCAC CCAACAACAA GGGTGTGTGT
TCGCCGGCGC ACGCGGTGCG CTGGGTCGAG CGCGACGGCA GTCTGGATGC ACGCCTGAAC
AACATCATGA TCGACCAATA CGCACCGGGC GAACCGGCTG GGTATCCGAC GCTGTGCAAG
GGGCGCTTCC TCGTCGACGG TGAGGTCGAC CACGTGCTCG AAGAACCCAC GAGCCTCAAT
GCGCTCAGCC TGTTGCCCAG GCTGCTCGCC ATGGGTGTGT CGGCGATCAA GATCGAGGGG
CGCCAGCGCA GTCCGGCGTA CGTTGCGCAG GTGGTGGCCA CATTGCGCGC CGCATTGGAT
GCTGCACAGG CGGACCCGGC GCGCTTCTCG GTCAAGCCCG ATTGGCAGGC CGCACTCGTG
CGCCACGCAG AAGGCGCGCA CGTCACGCAG GGTGCGTTTG ATCGGCCCTG GAAATAG
|
|---|
| Protein sequence | MTQNASPIEL VAPAGSLAAL KAAVEAGADT VYLGLKNATN ARNFAGLNFT ESDIRAGVEF
AHRKGRQVLF AINTFPQPGR AIEWHMAIDA AYMLGADAVI LADPGLMAYA CDRYPNLRLH
LSVQGSATHA DAIELMREQF GIHRAVLPRV LTLTEVERVI QQTSVQIEVF GFGSLCVMAE
GRCLLSSYAT GDSPNNKGVC SPAHAVRWVE RDGSLDARLN NIMIDQYAPG EPAGYPTLCK
GRFLVDGEVD HVLEEPTSLN ALSLLPRLLA MGVSAIKIEG RQRSPAYVAQ VVATLRAALD
AAQADPARFS VKPDWQAALV RHAEGAHVTQ GAFDRPWK
|
|---|
| |