| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1690 |
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| Symbol | |
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| ID | 8019343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 1799756 |
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| End bp | 1801636 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644830472 |
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| Product | type VI secretion protein, VC_A0110 family |
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| Protein accession | YP_002981645 |
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| Protein GI | 241663285 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.577908 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCCGC AACTGCTGGA TTACTACAAC CGGGAACTGG TCTACATGCG AGAGCTGGCC
GGTGAATTCG CCCGGCAGCA CCCGAAGGTG GCCAAGCGCC TTGGCATGCA CGGCATCGAG
GTGGCGGACC CATATGTGGA ACGCCTGATC GAGGCGTTCT GCCTGTTGTC GGCACGCACC
CAGATCAAGC TGGATGCGGA GTTCCCGCGC TTCACGCAAC GGTTGCTGGA GGTGGTCTAC
CCGAACTACG TAGCGCCGAC GCCGGCCATT GCGGTGGCGC AGTTCCACCC TAGCCGCACC
GAAGGCGATC TAGTGCGCGG GGTTCCGATA CCGCGGGACA CGGCTTTGCT CGCAAAGGCA
CCACCTGGCG AATCCACCGA GTGTGAATTC CGCACCACCC AACCGCTGAC ATTGCGGCCA
ATCGAGATTG CGGAAGCGCG ACTCACAGGC ATTCCACCGG ACATTCAGGG CTTGGAGCGC
TACGTGCCGG CTCAGGTGAG CGTCCAAGGC GCACTGCGCC TGCGGTTACG GCTCACACAC
GATGTCAAGT TCAGCCAGTT GGCCGGTCTG GATCGCCTGC CCATCTACCT GAGTGGCAAT
GATCAGATTG CGTCGCACTT GTTCGAGCTG CTTCACAGCG CAGGCTGCGC GACACTCATT
GGCAAGCCCG GCGCTATGGG TGAACGTCCA ACCGCCGTCA CGGACAACGC CGTCAGTCAT
GTCGGTATGG CACCCGACGA AGGCGCGTTT CCATTGGCCT GGAACAAGTT CCACGGACAC
AACCTCGTGC ATGAGTACTT TGCGTGCCCG CAGCGCTTTT ACTTCTTTGG GCTCAATGGG
CTTGCGCGCG GGCTCTCCAA GAATGATGGC CGCGAAGCGG AGATTGTGGT GCTGCTCTCC
AAAGCGCCGA GTGCTCTGGT CAGCCAGGTC GATGCCAGCC AGTTCGCGCT GTTCTGCACA
CCGGTCATCA ACCTCTTCCC GATGCGAACC GATCGGATGG AGGTGAGCCC GGGCCGTACG
GAATTCCACC TGGTGGCCGA CCGGAGGCGC CCGCTTGATT TCGAGGTGTT CTCGGTACAG
AAGCTCTCGG GCCAAGTGAA CGAGCACAGT ACGCCGATCG ACTTCCGGCC GCTGTTTGCC
ACGCTCAACA GCGATGAGGG CAACCATGGC CGGTACTTCT CTGCGCGACG GGAGCCGCGG
CTGTTCTCGG ATCAGGCACG CAAGTACGGC ACCCGCACGG CCTATACGGG CACGGAGGTG
TTTCTCTCGC TGGTGGACCA GAACGAAGCG CCCTACCCGA ACGACCTGCG TTATCTGTCG
GTCGAGGCAA TGGTGACCAA TCGGGATTTG CCGAATCTGG TGCCGCGCAA TGGATTCAGT
GATCTGAGCT CACCCGCTTC GATTCCGGTG GAAGGGGTTG GGTTGATCCG TCCGCCATCG
GCACCACATG CACCGTTTGC TGAAGGGGAG ATGGCCTGGC GGCTGATACG CCAGTTGGGC
TTCAACTACC TGTCGCTGAT GGATCTCGAC CATCGACAGG GTGGCCAGGG GCTGCGCGAC
ATGCTTCGGC TGTTTGTGTC GGCCAGCGAT ACCGCCCAGC AGCGGCAGAT CGAGAGCCTG
ATCGGTTCCA AGCTCAAGCC CGTCACACGG CGCATGCCGG GGGCGGGTCC GATTCTGTAC
GGCCGTGGCG TGCAGTGTCA GTTGACGGTG GATGAGGCCG GCTTCTCTGG CGTCAGCCCG
TACCTGTTTG GCGTGGTGCT GGAACACTTC TTGGCTCGCC ATGTGTCGGT CAACGCTTTC
ACGGAAACCG AGCTGCACGC GATGGAACGC GGTCTGATTC ACCGATGGTC GCCCCGTATG
GGTGGCCGCA ATGTCATTTA G
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| Protein sequence | MDPQLLDYYN RELVYMRELA GEFARQHPKV AKRLGMHGIE VADPYVERLI EAFCLLSART
QIKLDAEFPR FTQRLLEVVY PNYVAPTPAI AVAQFHPSRT EGDLVRGVPI PRDTALLAKA
PPGESTECEF RTTQPLTLRP IEIAEARLTG IPPDIQGLER YVPAQVSVQG ALRLRLRLTH
DVKFSQLAGL DRLPIYLSGN DQIASHLFEL LHSAGCATLI GKPGAMGERP TAVTDNAVSH
VGMAPDEGAF PLAWNKFHGH NLVHEYFACP QRFYFFGLNG LARGLSKNDG REAEIVVLLS
KAPSALVSQV DASQFALFCT PVINLFPMRT DRMEVSPGRT EFHLVADRRR PLDFEVFSVQ
KLSGQVNEHS TPIDFRPLFA TLNSDEGNHG RYFSARREPR LFSDQARKYG TRTAYTGTEV
FLSLVDQNEA PYPNDLRYLS VEAMVTNRDL PNLVPRNGFS DLSSPASIPV EGVGLIRPPS
APHAPFAEGE MAWRLIRQLG FNYLSLMDLD HRQGGQGLRD MLRLFVSASD TAQQRQIESL
IGSKLKPVTR RMPGAGPILY GRGVQCQLTV DEAGFSGVSP YLFGVVLEHF LARHVSVNAF
TETELHAMER GLIHRWSPRM GGRNVI
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