| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1675 |
|---|
| Symbol | |
|---|
| ID | 8019328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1781021 |
|---|
| End bp | 1782364 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644830457 |
|---|
| Product | type VI secretion protein, VC_A0114 family |
|---|
| Protein accession | YP_002981630 |
|---|
| Protein GI | 241663270 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.88528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0077822 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTGGT ACAACAAAGT CGTCTGGAGC GAAGGGCTGT TTCTGCGCCC GCAGCTCTTC
CAGCAGCAAG AGCGCTACCT GGAGCACTTC GCCCACAAGC GTGCCGCTGC CTTGAGCCCA
TTCTTCTGGG GCTTCCACCA CTTGGCGATC GATGCCGAAG CGCTCGCGCT GGGCAAGCTC
GTGGTCTCGG GGGCCGCAGG CATCTTCCAG GACGGCACAC CGTTCGATGC ACCGGCCCAC
GCCAAGCTGC CCGCTCCGCT GGCGTTGCGC CACGAGCACC TGAACCAGAT CATTTATCTG
GCCGTGCCCA TCCGCACCCC CAACGCCGAA GAAACCAGCT TCGAAGACGC CCAGGATTCG
TTGGCACGCT ATCGCAGCTT TGAAGAAGAC CTGCTCGACG CCAACTCCAT CGGCCAAGGC
CCCAAGCTCG TGCAGTTGGG CGACTTGCGC CTGCGCTTGA TGCCCGAGAA GGAACTGACC
GAATCCTGGC TTGGCATGCC GCTAGCCAAG GTGACAGAAA TCCGTGCGGA CGGCAGCGCC
CGGCTCGATG CCGGACTGAT TCCTCCGGCC AACGTCTACA CCGCCAGCGC CTTGCTGCAA
ACGTGGCTGG CCGAAGTACA CGGCCTGCTG CGCCTGCGCG CCACCTCCAT GGCCGAGCGC
CTCACCGCCT CCAGCACCAG AGGCGGAGAC GCCGCCGAGA TTTCCGAATA CCTCATCCTG
CAACTGTTCA ACCGGGCCGA ACCCGTGCTT GAACACATGC TGGCCGCCAA GGCCGATTCG
CCCGAAGCCC TGTATGTCCA ACTGACCGCG CTTGCCGGCG AGCTGTCCAC CTTCGTGCGT
ACCGCCACCC GCCGCCCGAA TCCGGATTAC CCCGCTTACC GGCACGACGA GCCCCACACC
TGCATCAAGC CGGTGGTGGA TGACCTGCGC TTCCTGCTCA ACGTGGTACT GGAGCGCGGC
GCCCAGCGCA TCGAATTGCG CGACCAGCAA CACGGCATCC GTCTGGCGGT GCTGGACCCG
GCCGAGTTCG AGCGGTTCAA CACCTTCGTG CTGGCCGTGG GCGCACAACT GCCCAGCGAC
GTGCTGCAGC AGCAGTTCCC CGCGCAAGCC AAGGTCGGCC CGGCCGAGCG GCTGGCCGAA
CTCATCCGTT CGCACCTGCC CGGCATCCCG CTGCAGGCGA TGCCCGTACC GCCGCGCCAG
ATTCCGTTCA ATGCGGGCCA GGTCTATTTC GAACTGCCGC AAGACCATCC TCTGTGGGCG
CAAGTCCAGC GCTACGGCGG CTTGGCCTTG CATGTGGCAG GGAACTTCCC CGAGCTGCGG
CTTGAACTGT GGGGGGTGCG TTAA
|
|---|
| Protein sequence | MSWYNKVVWS EGLFLRPQLF QQQERYLEHF AHKRAAALSP FFWGFHHLAI DAEALALGKL
VVSGAAGIFQ DGTPFDAPAH AKLPAPLALR HEHLNQIIYL AVPIRTPNAE ETSFEDAQDS
LARYRSFEED LLDANSIGQG PKLVQLGDLR LRLMPEKELT ESWLGMPLAK VTEIRADGSA
RLDAGLIPPA NVYTASALLQ TWLAEVHGLL RLRATSMAER LTASSTRGGD AAEISEYLIL
QLFNRAEPVL EHMLAAKADS PEALYVQLTA LAGELSTFVR TATRRPNPDY PAYRHDEPHT
CIKPVVDDLR FLLNVVLERG AQRIELRDQQ HGIRLAVLDP AEFERFNTFV LAVGAQLPSD
VLQQQFPAQA KVGPAERLAE LIRSHLPGIP LQAMPVPPRQ IPFNAGQVYF ELPQDHPLWA
QVQRYGGLAL HVAGNFPELR LELWGVR
|
|---|
| |