Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1674 |
Symbol | |
ID | 8019327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 1779735 |
End bp | 1780982 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644830456 |
Product | type VI secretion system OmpA/MotB family protein |
Protein accession | YP_002981629 |
Protein GI | 241663269 |
COG category | [S] Function unknown |
COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family [TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.169962 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0141986 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGAGC CAGCAGCGCA GCCTAGCCCC GAGCCGGTAC GCTCTGCCTC CACCCGAGCT GCCAACGAAC CACGACAGAT CAAGCGCAAG CCGATCGAGC AACGTGTCGA GAAAGCCAAG CAGGCAGTCA ACCCGGTACT GTCCGCCGCG CGGCCCTTGC TGCGCGCCCT GGCGGATATG CCGAGCACAC TGCGCGTCGA TCAGGCCGCG CTTCTGAAAG ACGTGCTTGA ACAAGAGCTG CACGACTTCC AGACCGTCTG CGAACGGGTG GGCATTCGGT CCGAGCACAC CCTTGCCGCA CACTACAGCC TGTGCACCGC CTTGGATGAA GCGGCTTTAG GCACACCATG GGGCAGCAAT GGTTCCTGGG CGAAGGACAG CCTGCTCGTC AAACACCATG GCGGCACTGA CGGCGGCACC AAGGTCTTCC AAGTGCTCGG CCGGCTGGTC AACAGCCCTG AAGAGCACAT CGACGTCATC GAGCTGATCT ACTACCTGCT CTCGCTCGAT TTCCAGGGCC GCTATCGTGG CCCCGCTGAG GGCGAGCGGC AACACCTGGC GATTCGGCAG AGCCTGCATA CCCTGATCCG CAAGCATCGC GGCGCCGTGC CCAGGGAACT GTCCCCGAAT CTGCCCGTGA TACCGGCAGG GCGCTTCTCC ATGATTCGCA CCGTCCCGAT CTGGTTCAGC GCCACCGTGC TGGGCATGGC CGCCTTCGGC TTGTTTGGCT GGTACAAGTA CCAGCTCTCG CTGCGCACGC ACGATCTGGA ACAACAGATC CAGGCCATCG GGCAGATCAC CCCGCCGCCA CCGCCAAAGG TGGTCCTGCG TCTGGCCGAA CTGCTCAAGG ACGAAATCGC TCGTGGCCAG GTCAAGGTGG AGGAAGATGC CACCCACAGC GCCGTCACCT TCCGTGGCGA CGACATGTTT GCCGGCGGTC GCGCGGACGT GAACGCCAAG GTCCAGCCCC TGCTGGACAA GATCGCCTCG GAAATCACCA AGGTACCCGG CAAGGTAACC GTCACCGGGC ACAGTGACAA CCAGCCCATC AAGACGGCTA AGTTCCCTTC CAACCAGGTG CTCTCGGAAG AGCGTGCCGT GCACGTCTCT GAATACCTCG CCTCGCGTGG CGTGGCACAG GGCCGGCTCG AAGCCGTGGG CAAGGGCGAC ACCGAACCCG TGGCCGATAA CTCGACTTGG AATGGCCGGG CAGCGAACCG CCGCGTGCAG ATCGACGTCA CGCAGTAA
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Protein sequence | MQEPAAQPSP EPVRSASTRA ANEPRQIKRK PIEQRVEKAK QAVNPVLSAA RPLLRALADM PSTLRVDQAA LLKDVLEQEL HDFQTVCERV GIRSEHTLAA HYSLCTALDE AALGTPWGSN GSWAKDSLLV KHHGGTDGGT KVFQVLGRLV NSPEEHIDVI ELIYYLLSLD FQGRYRGPAE GERQHLAIRQ SLHTLIRKHR GAVPRELSPN LPVIPAGRFS MIRTVPIWFS ATVLGMAAFG LFGWYKYQLS LRTHDLEQQI QAIGQITPPP PPKVVLRLAE LLKDEIARGQ VKVEEDATHS AVTFRGDDMF AGGRADVNAK VQPLLDKIAS EITKVPGKVT VTGHSDNQPI KTAKFPSNQV LSEERAVHVS EYLASRGVAQ GRLEAVGKGD TEPVADNSTW NGRAANRRVQ IDVTQ
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