| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1552 |
|---|
| Symbol | |
|---|
| ID | 8019199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1646649 |
|---|
| End bp | 1647401 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644830330 |
|---|
| Product | Asp/Glu/hydantoin racemase |
|---|
| Protein accession | YP_002981509 |
|---|
| Protein GI | 241663149 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3473] Maleate cis-trans isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00579321 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.227664 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAATT TCCGCATTGG GCAAATTGTC CCCAGCTCCA ATACCACGAT GGAGACCGAA
ATCCCGGCGA TGCTGACCTC CCGCTACGCC GAGTTTCCCG ATGAACGTTT CACGTTCCAC
TCAGCCCGCA TGCGCATGAT GCATGTCACG CCAGAGGAAC TGAAAAACAT GGACGTGGCA
AGCGACCGCT GCGCGCTTGA ATTGAGTGAT GCCCGCTGCG ATGTCATGGC ATATGCTTGC
CTGGTCGCCA TCATGAGCCA GGGCCGTGGC TATCACCGTG TTTCGCAGGA GCGTCTGGCC
AGGATTACCG AGCAGAACAA CGCCCCCACG CCTGTGCTCA GTTCCGCCGG AGCCCTGATA
GACGCCATCC ATGTACAGGG CTACAAGAAG GTTGCAATCA TCACGCCATA CATGAAGCCG
CTCACGCAAA CAGTGATCGA CTATATCGAG GATTCCGGTA TCGAAGTCAC CGATTCAATC
AGCCTGGAAG TATCGGACAA TCTTGCCGTG GGTCGGCTCG ATCCGGCAAA CCTTGTCGGC
CATGCGGATC GCCTCAACAT CAGCGGCGCC GATGCGGTCG TGCTGTCGGC ATGCGTGCAG
ATGCCGTCGC TGCCATCAAT TCAGGTGGTC GAAGACCGGC TCGATCGGCC TGTGTTCTCG
GCGGCGACTT CTACGGTCTA CCAGATGCTG AAGACGCTTG GGCTGAAGGC GAAGGTTCCG
AGTGCAGGTT ATCTGCTGTC CGGAGCATTC TGA
|
|---|
| Protein sequence | MKNFRIGQIV PSSNTTMETE IPAMLTSRYA EFPDERFTFH SARMRMMHVT PEELKNMDVA
SDRCALELSD ARCDVMAYAC LVAIMSQGRG YHRVSQERLA RITEQNNAPT PVLSSAGALI
DAIHVQGYKK VAIITPYMKP LTQTVIDYIE DSGIEVTDSI SLEVSDNLAV GRLDPANLVG
HADRLNISGA DAVVLSACVQ MPSLPSIQVV EDRLDRPVFS AATSTVYQML KTLGLKAKVP
SAGYLLSGAF
|
|---|
| |