Gene Rpic12D_1527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1527 
Symbol 
ID8019172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1616677 
End bp1618272 
Gene Length1596 bp 
Protein Length531 aa 
Translation table11 
GC content69% 
IMG OID644830304 
Productcarbohydrate kinase, YjeF related protein 
Protein accessionYP_002981485 
Protein GI241663125 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0063] Predicted sugar kinase 
TIGRFAM ID[TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.643488 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.335611 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTCAC ACCCCGCCTG GCGCGAAATC CTGATCGACG GAGCCTTGGC CGCTCACACC 
GGCGCCGACC TGCTCTTCGG CACAGCGGGC GTCCGCGCGC TGGAAGCAGC TGCGTACCGA
ACCCTCGAAC CCTTCACCTT GATGGCCAGG GCGGGCGAAG CCGCCGCCGA CTGGCTGCAG
ACGCGCGCGC CACACGGGCA TGTCCTGCTC GTTGCCGGCC CAGGCAACAA CGGTGGCGAT
GCGCTCGTTG CGGCGACGGT GCTGCATCTG GCCGGGCGCG CCGTCACGGT GTGGCTTGCC
GCCGACCCGG CCAAGCTGCC TGATGACGCG CGCCGCGCCT GGACGGAGGC TTGTGCCGCG
AATGTTCCCA TTGAACCTCT GCACACGGCA GCTTCGGTGC CGGCGGCTGC CTCCGTCATC
GTCGACGGTC TCTTTGGTAT CGGACTCGCC CGGCCGCTGA CGGGGTTGCA TGCCGCACTG
GTCGACACCA TCAATGCCAG CGGCTTGCCG GTGTACGCAC TGGACATTCC CTCCGGGCTG
AACGGCGATA CGGGTCAACC GCCCGCCGCT GAGTCCCCCG TTATCCAGGC GCGCGCCACC
ATCACCTTCC TGGCGGTCAA GCCGGGCTTG CTGACGGGGG ATGGCCGCGA TGCCTCCGGC
GACATTGCGC TGGCCGATCT GCAAGCCGCA CAACCGGCTT ATGACGGCGT GATTGAAGCG
GACGCCTTCG TCAACACGCC GTCACGCTGG CTCCCGCACG TGCCGCGCCG GCGGCATAAC
GGCCACAAAG GTACCTACGG CAGTGCGGCA ATCGTGGGCG GTGCGGCAGG CATGGTCGGA
GCGCCGCTGC TGTCGGCGCG CGGCGCGCTC CATCTGGGCG CGGGCAAGGT GCACGTCGTC
TCGCTTGCGT CCGATGCTCC GCGTGTCGAC GCCGCGCAAC CTGAATTGAT GCTGCACAGT
TGGGGCACCC TTGATCTGGG TGGCATGCAG GCGCTGGCCC TGGGCCCCGG CATGGGCACC
GGCAAAGAAT CGGAAGCCGC GCTCGAGCAT CTGCTGGACC GCATGCTGTC GGTGCGCACG
CCCGCCGTGT TCGACGCCGA TGCACTGAAC CTCTTTGCGA AAACGCCGGC GCTGCTCGCA
CGGCTCACGC AGTTGGCCGG AAGCGGTGTG CCGTTGGTGC TGACGCCGCA TCCGCTGGAA
GCCGCGCGCC TACTGCAGAC CGAGGCGCGC GCCGTGCAAC AGGACCGACT TGCCGCCGCT
CAGGCGCTTG TCAATCGGAC GGGCGCGGTG GTCGTGCTCA AAGGCTCGGG CACAGTCATC
GCGGCGCCTG GCATCCAGCC GGCCATCAAC CCAACCGGCA ACGGCGGGCT CGCCACCGGG
GGGACCGGCG ATGTGCTGAC CGGCATGATC GGCGCACTGC TTGCGCAAGG CATGGGCGCG
CGCGAAGCCG CACTGGCGGC TGTATGGCTG CACGGGCGAG CCGCCGATGA CCTCGTCCAC
GCGGGCGTCG GCCCCATCGG CCTGCACGCA AGCGAGCTAT GCGCGCCGGC GCGAGGCGCT
CTCAACGCCT TGCTGGCGTC GGACGTTCGC CGATAG
 
Protein sequence
MSSHPAWREI LIDGALAAHT GADLLFGTAG VRALEAAAYR TLEPFTLMAR AGEAAADWLQ 
TRAPHGHVLL VAGPGNNGGD ALVAATVLHL AGRAVTVWLA ADPAKLPDDA RRAWTEACAA
NVPIEPLHTA ASVPAAASVI VDGLFGIGLA RPLTGLHAAL VDTINASGLP VYALDIPSGL
NGDTGQPPAA ESPVIQARAT ITFLAVKPGL LTGDGRDASG DIALADLQAA QPAYDGVIEA
DAFVNTPSRW LPHVPRRRHN GHKGTYGSAA IVGGAAGMVG APLLSARGAL HLGAGKVHVV
SLASDAPRVD AAQPELMLHS WGTLDLGGMQ ALALGPGMGT GKESEAALEH LLDRMLSVRT
PAVFDADALN LFAKTPALLA RLTQLAGSGV PLVLTPHPLE AARLLQTEAR AVQQDRLAAA
QALVNRTGAV VVLKGSGTVI AAPGIQPAIN PTGNGGLATG GTGDVLTGMI GALLAQGMGA
REAALAAVWL HGRAADDLVH AGVGPIGLHA SELCAPARGA LNALLASDVR R