Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1488 |
Symbol | |
ID | 8019133 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 1568852 |
End bp | 1570933 |
Gene Length | 2082 bp |
Protein Length | 693 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644830266 |
Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
Protein accession | YP_002981447 |
Protein GI | 241663087 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00162023 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0186497 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGCGG AGTACAAGGT CCAGGACGGC GTTGCCGTCA TTACGCTCAG CAACCCGCCT GTCAACGGCC TTGGCCACTC CACGCGCCTG GGCATCGTTG AGGGCATGGT GAAAGCGGGC GACGACGCCA ACGTTAAGGC CATCGTCATC ACCGGTGCAG GCAAGGCCTT CTCGGGCGGC GCCGATATCC GCGAATTCAA TACGCCCAAG GCGACGCAAG AGCCGACGCT GCATGCCGTG ATCAAAGCCG TCGAGTCGAG CAGCAAGCCG GTCGTGGCGG CCATCCATTC GGTGGCGATG GGCGGCGGGC TAGAACTGGC GATGGGCTGT CACTACCGCG TGGCCGCACC GGGCGCGCAG ATCGCGCTGC CGGAAGTGAA GCTGGGCATC CTGCCGGGCG CTGGCGGCAC GCAACGTCTG CCGCGCGCCA TCGGCCTGGA ACCGGCGCTG AACATGATTG TCTCCGGCAA TGCCATTCCG TCGGAAAAGC TGGCCAAGAG CGGCCTGTTC GACCAGATGA TCGAAGGTGA CCTGATGGCC GGTGCCATCG ATTTCGCACT GAAGGCCGCG GCCGAGGGCA AGCTGCCGAA GCTGCGCGAT CGCAAGGTCG AGCACGACAA TCCGCAAGGT TTCCTGCAAT TCGCGCGCAA CACCGTCGCG GCCGTCGCCA AGAACTTCCC GGCGCCGGGC AAGTGCGTTG ACGCCGTGCA GGCCGCCGTG GAAAAGCGTT TTGACGACGG CATCAAGTTC GAGCGCGACC TGTTCATCGA ACTGGTGAAT ACGCCGGAAT CGCGCGCACT GCGCCACGCC TTCTTTGGTG AACGCGCTGC GAGCAAGATT CCGGACGTGC CGGAAGACAC GCCGGTGCGC AAGGTGGAGA AGGTTGCCGT GATCGGCGCC GGCACGATGG GCGGCGGTAT CTCGATGAAC TTCCTGAACG CCGGCATTCC GGTGACGATC CTGGAAACCA AGCAGGAAGC GCTGGACCGC GGCGTCGCCA CCATCCGCAA GAACTACGAG AACAGCGCCA AGAAAGGCAA GCTCACGCAA GAGAAGGTCG AGCAGCGCAT GGCCCTGCTG ACCCCGACGC TGTCTTACGA CGACATCAAG GATGCCGACC TCGTCATCGA GGCCGTCTTT GAAGAAATGG GTGTCAAGGA AGTCGTGTTC AAGAAGCTGG ACGAAGTCGT CAAGCAGGGC GCGATCCTGG CGTCGAACAC CTCCACGCTG GACGTCGACA AGATCGCCAG CTTCACCAAG CGCCCGCAAG ACGTGGTCGG CATGCACTTC TTCAGCCCGG CCAACGTGAT GAAGCTGCTG GAAGTCGTGC GCGGCAAGGA GACCGCCAAG GACGTGCTGG CCACCGTCAT GAAGCTGGCC AAGGCCATCA AGAAGACGGC GGTCGTTTCC GGCGTGTGCG ATGGCTTCAT CGGCAACCGC ATGATCGAGC AGTACAGCCG CCAGGCCGGC TACCTGCTGG ACGAAGGCGC GCTGCCCGAG CAGGTCGACA AGGCCATCGA GAAGTTCGGC TTTGCCATGG GCCCGTTCCG CATGGGCGAT CTGGCCGGCA ACGACATCGG CTGGGCCATC CGCAAGCGCC GCGCCGTGGA CAAGCCGGAC ATCGTCTACT CGAAGACCGC CGATCTGCTG TGCGAGATGG GCCGCTTTGG TCAGAAGACC GGCGGCGGCT GGTACGACTA CAAGGCGGGC GACCGCAAGC CGTATCCGAA CCAGCAGGTC AACGACATGA TCGTCCAGCA CTCGAAGGAT CTGGGCATCA CGCGCCGCAA GATTTCGGAC GAGGAAATCG TCGAGCGCCT GGTGTTCGCG CTGGTCAACG AAGGCGCGAA GATCCTGGAA GAGGGCATTG CCTCCAAGGC TTCCGACATC GACATGGTGT ACCTGACCGG CTATGGCTTC CCGCTGTTCC GCGGTGGCCC GATGCTCTAC GCAGACACGG TCGGCCTGTA CAACGTCGCG CAAGCCATGC ACCGCTACAG CAAGGGCTAC CACGGTGAAG CGTGGAAGGT TGCCCCGCTG CTGCAGAAGC TGGCCGATGA AGGCAAGGGC TTTAATGGCT GA
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Protein sequence | MTAEYKVQDG VAVITLSNPP VNGLGHSTRL GIVEGMVKAG DDANVKAIVI TGAGKAFSGG ADIREFNTPK ATQEPTLHAV IKAVESSSKP VVAAIHSVAM GGGLELAMGC HYRVAAPGAQ IALPEVKLGI LPGAGGTQRL PRAIGLEPAL NMIVSGNAIP SEKLAKSGLF DQMIEGDLMA GAIDFALKAA AEGKLPKLRD RKVEHDNPQG FLQFARNTVA AVAKNFPAPG KCVDAVQAAV EKRFDDGIKF ERDLFIELVN TPESRALRHA FFGERAASKI PDVPEDTPVR KVEKVAVIGA GTMGGGISMN FLNAGIPVTI LETKQEALDR GVATIRKNYE NSAKKGKLTQ EKVEQRMALL TPTLSYDDIK DADLVIEAVF EEMGVKEVVF KKLDEVVKQG AILASNTSTL DVDKIASFTK RPQDVVGMHF FSPANVMKLL EVVRGKETAK DVLATVMKLA KAIKKTAVVS GVCDGFIGNR MIEQYSRQAG YLLDEGALPE QVDKAIEKFG FAMGPFRMGD LAGNDIGWAI RKRRAVDKPD IVYSKTADLL CEMGRFGQKT GGGWYDYKAG DRKPYPNQQV NDMIVQHSKD LGITRRKISD EEIVERLVFA LVNEGAKILE EGIASKASDI DMVYLTGYGF PLFRGGPMLY ADTVGLYNVA QAMHRYSKGY HGEAWKVAPL LQKLADEGKG FNG
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