| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1459 |
|---|
| Symbol | |
|---|
| ID | 8019104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1541005 |
|---|
| End bp | 1542036 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644830237 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_002981418 |
|---|
| Protein GI | 241663058 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0283759 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTC TCGTTCAATG GCTGCGCGCG TGCGGCCTCG TGGCTGCCGG CGCATTCGCC
GTGGCTGCGC CGGTGCAGGC ACAGCCGGCC GGCCAGCAAG TCGCCATCTG CTACAACTGC
CCGCCCGAAT GGGCCGACTG GGCCAGCCAG ATCAAGGCCA TCAGGGACAA GACCGGCATT
ACCGTGCCGT TCGACAACAA GAACTCCGGC CAGGCCATCG CGCAGATGCT GGCCGAGAAA
TCGCACCCCG TGGCTGACGT GGCCTACCTG GGCATCACGT CCGCGTATCA GGCCAAGGAA
AAGGGCCTGG TCGCCAACTA CAAGCCCAAG CACTGGGAAG ACATTCCGGC CGGCATGAAA
GACCCGGACG GCGCGTTCTT CTCGATCCAC TCCGGCACGC TGGGCTTCTT CGTCAACAAG
GACGCACTGG AAGGCAAGCC CGTGCCGCGC TCCTGGAAAG ACCTGCTCAA GCCTGAATAC
AAGGGCATGG TCGGCTACCT CGACCCGAGC AGCGCCTTCG TCGGCTACGT AGGCGCCGTG
GCGGTCAACC AGGCGCTGGG CGGCTCGCTC GACGACTTCA GCCCCGCCGT CGAATGGTTC
AAGCAGTTGA AGAAGAACGC GCCGATCGTG CCGAAGCAAA CCGCTTACGC GCGCGTCGTG
GCGGGCGAAA TCCCCATCCT GCTCGACTAC GACTTCAACG CCTACCGCGC CAAGTACAAG
GATCACGCGA ACGTGGAATT TGTGATTCCG CAAGAAGGCA CGATTGCCGT GCCGTACGTG
ATGAGCCTGA CGGCTGGTGC TCCGCACGCC GAGAACGCCA AGAAGGTGCT GGATTTCGTG
TTGTCGGACG AAGGCCAGAC GCTGTGGGCC AACGCCTACC TGCGCCCGGT GCGCGCCAGC
GCGATGAGCA AGGAGGCTGC CTCGCGCTTC CTGCCGGCCA GCGAATACGC CCGCGCCAAG
ACGGTCGACT TCAACAAGAT GGCCGCCGGC CAGCAGGCGT TTGGCACGCG CTACCTGAAC
GAGGTCCGCT GA
|
|---|
| Protein sequence | MKRLVQWLRA CGLVAAGAFA VAAPVQAQPA GQQVAICYNC PPEWADWASQ IKAIRDKTGI
TVPFDNKNSG QAIAQMLAEK SHPVADVAYL GITSAYQAKE KGLVANYKPK HWEDIPAGMK
DPDGAFFSIH SGTLGFFVNK DALEGKPVPR SWKDLLKPEY KGMVGYLDPS SAFVGYVGAV
AVNQALGGSL DDFSPAVEWF KQLKKNAPIV PKQTAYARVV AGEIPILLDY DFNAYRAKYK
DHANVEFVIP QEGTIAVPYV MSLTAGAPHA ENAKKVLDFV LSDEGQTLWA NAYLRPVRAS
AMSKEAASRF LPASEYARAK TVDFNKMAAG QQAFGTRYLN EVR
|
|---|
| |