| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1407 |
|---|
| Symbol | |
|---|
| ID | 8019052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1486355 |
|---|
| End bp | 1487485 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644830186 |
|---|
| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| Protein accession | YP_002981367 |
|---|
| Protein GI | 241663007 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0583386 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0513768 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACC TCGACAACCC ATCGCATGAT CGCGAGGTGG GCGTTGCCGA CGGCACGCAA
GACACGACGC GTATCGACGA CACCCGCATC GGTGCGGTGC GTCCGCTGAT TTCCCCGGCG
CTGCTGCTGG ACGAGCTGCC CGTGCCTGCC GATACGCAGA CGCTCGTTGA AGACACCCGC
CGTGCCATCA GCAACATCCT GCACGGCCGT GACGATCGGC TGCTGCTGAT CGTCGGCCCG
TGCTCGATCC ACGATCACGA TCAGGCGCTC GATTACGCGC GCCGCCTCAA GGCTGCGGCC
GATGCACTGA AGGACGACCT GCTGATCGTG ATGCGCGTCT ACTTTGAGAA GCCGCGCACG
ACGGTCGGTT GGAAGGGTTA CATCAACGAC CCGCGCCTGG ACGGCAGCTT CCGCATCAAT
GAAGGGCTAC GCGCTGCGCG GCAACTGCTG CTCGACGTCA ACGCGCTCGG GCTGCCCGCC
GCGACCGAAT TTCTCGACCT GCTGAGCCCA CAATACATTG CCGACCTCAT CGCATGGGGC
GCGATCGGCG CGCGCACGAC AGAAAGCCAG AGCCATCGGC AGCTCGCCTC AGGCTTGAGC
TGCCCCATCG GTTTCAAGAA CGGCACGGAC GGCGGCGTGC AGGTTGCCTC GGACGCGATC
ATCGCGGCGC GCGCCAGCCA TGCGTTCATG GGGATGACGA AGATGGGCAT GGCCGCGATC
TTCGAGACAC GCGGCAACGA CGACGCGCAC GTGATCCTGC GCGGCGGCAA GGGCGGGCCG
AACTACGGCA GCGAGCACAT CGAGGCGGCC TGCGCGGCGC TGCGCGCGGC AAAGTTGCGC
GAACAGGTCA TGGTGGACTG CTCGCACGCG AACTCAAACA AGTCGCATGA ACGTCAGATC
GACGTTGCGC AAGATCTGGC GCGGCAACTC TCGCAGGGCG AGCGCCGGAT CGTCGGCGTG
ATGGTCGAAA GCAATCTCGA AGCGGGCCGC CAAGACCTGA AACCGGGTGT GCCGCTCAAG
TACGGCGTGT CGATCACCGA TGCGTGCCTG AGCTGGACCC AGACGGAGCC CGTACTCGAC
ATACTCGCCG AGGCGGTGCG GCATCGGCGG GCGTATTCGT ACGACGGGTA A
|
|---|
| Protein sequence | MKNLDNPSHD REVGVADGTQ DTTRIDDTRI GAVRPLISPA LLLDELPVPA DTQTLVEDTR
RAISNILHGR DDRLLLIVGP CSIHDHDQAL DYARRLKAAA DALKDDLLIV MRVYFEKPRT
TVGWKGYIND PRLDGSFRIN EGLRAARQLL LDVNALGLPA ATEFLDLLSP QYIADLIAWG
AIGARTTESQ SHRQLASGLS CPIGFKNGTD GGVQVASDAI IAARASHAFM GMTKMGMAAI
FETRGNDDAH VILRGGKGGP NYGSEHIEAA CAALRAAKLR EQVMVDCSHA NSNKSHERQI
DVAQDLARQL SQGERRIVGV MVESNLEAGR QDLKPGVPLK YGVSITDACL SWTQTEPVLD
ILAEAVRHRR AYSYDG
|
|---|
| |