| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1336 |
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| Symbol | |
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| ID | 8018981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 1413147 |
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| End bp | 1415588 |
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| Gene Length | 2442 bp |
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| Protein Length | 813 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644830116 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_002981297 |
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| Protein GI | 241662937 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.528438 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAAGA TCGCAGAACC CGCGTCCGGT ACCACGCCCG AGGCGCGGGC GGCTTGGCTG
CGTGCCGAGC TGAACCGCTA CGCCCACGAG TACTACGTGC TCGACCAGCC CAGCGTGCCC
GACGCTGAAT ACGACCGGCT CTATCGCGAG CTGGAAGCGC TGGAGGCCGA ACATCCCGAA
CTGAAGACAC CCGATTCGCC CACGCTGCGG GTCGGTGGCG CCGTCCTGCC CGAATTTGCG
GCGGTCAGGC ATGTCATCCC CATGCTGTCG ATCCGCACCG AGACCGACAC CACCCCCAAC
GGCGCGCGCG CGTTCGACGC CAGCGTACGC CGCGAGCTGG GCCTTGATGA CACCGATCCG
CCCGTGGAAT ACGCCGCCGA GCTGAAGTTC GATGGCCTGG CGATCAGCCT GCGCTACGAG
CGCGGTTATC TCGTGCAGGC CGCCACACGT GGCGATGGCA CCACGGGCGA AGACGTCACG
CAGAACATCC GCACGATCCG CCAGATTCCG CTGGGGCTGT CGCCAGTTGA TGGCCACGTG
CCCGACGTGC TGGAGGTGCG CGGCGAGGTC TACATGCGTC GCGACGACTT CGAGAAGCTC
AACGCCCGCC AGCGAGAGCG CGGTGACAAG ACCTTCGTCA ACCCGCGCAA TACCGCAGCC
GGTGCCGTCC GCCAGCTCGA TCCTAAGATG GCTGCCGAGC GCCCGCTGTC GTTCTTCGCC
TATGGGCTGG GCGAAGTGGC CGGCTGGAAG GGCATGCCCG GCACGCATTC CAGCATGCTC
GACGTGCTGC AGGCGTTCGG TTTCCCGGTC AGTAATGAAC GCGCGGCTGT GGCGGGCGGT
GAAGGCCTGG TCAGATTCCA TGAGGCCATC CGGGCCAAGC GCGACAGCTT GCCGTTCGAC
ATCGACGGCG TCGTCTACAA GGTCAACTCG CTCGCGTTGC AGCGTGAACT CGGCTTTCGC
TCACGTGAGC CGCGCTGGGC GGTTGCACAC AAATATCCGG CGCAGGAAGC GCTGACCACG
GTCGAATCCA TTGACGTGCA AGTCGGCCGA ACGGGCGCCA TCACGCCGGT GGCGCGGCTG
GTGCCGGTGT TTGTTGGCGG GGTAACGGTC ACCAATGCGA CGCTGCACAA CGAAGATGAA
GTGCGCCGCA AGGATGTACG CGTGGGCGAC ACCGTGATCG TGCGGCGCGC GGGTGACGTG
ATTCCCGAGG TGGTGAGTGT GGTGCTTGAT CGCCGCCCAA TGGATGACGT CCCGGGCAGC
GACTTGTTCA ATCCGCAGCA GCAGCCCAAG TACCCGCCAT TCGAACTGCC GAAGACGTGC
CCGGTTTGCG GCTCGCACGT CGTGCGCGAA GAGGGTGAGG CGGTGGCCCG TTGCTCCGGG
GGGCTGTTCT GCTCGGCCCA GCGCAAGGAG GCGATCCGCC ACTTTGCCGG TCGCCGCATG
ATGGACATCG AAGGCCTGGG CGAGCGTTAC ATTGACAACC TGGTCGAGTT GGACTACGTG
CACGGCATTG CCGACCTGTA CAAGCTCACG CTCGAAGATT TTCTGGAGAT GAAGCGCCGT
GCGGACGAAC GTGATGGCGT GACGCCCGAG ACGGTTTCCG CAGGCAAGAT CGCCACCAAG
TGGGCCGAGA ATCTGCTGGA GGGCATCCAG GCCAGCAAGA CGCCTCCGCT GGCGCGCTTC
CTGTTTGCGC TGGGCATTCG CCACGTGGGC GAGTCGACCG CCAAGACGCT TGCCGACTGG
CTCGGCAGCC TGGCCATGAT CCGGCGTGCG CCTGCGCCGC TGCTGCTGGC GCTGCCCGAT
GTGGGTGCCA CGGTGGCTGA AGCCATCGCC GATTTCTTTG CCGAGCCGAA GAACCAGCAG
GCGCTCGATG CGCTGCTCGA AGCCGGTGTT GCACCGCAAG GCGAGCATGC GCCCAACGCG
AAGCTGCGCG AGAAGCTGGA GCCGGCCGAA CTGTACGCCA CGCTGGGCGT GCCCAAGCTG
ACCGCCACGC GCGCAAAGCA ATTGGCCGTG GCAGCGCCAA CGCTTGCCCA GCTCGCCAGC
GTTGAGCCCG ATCAGTTGGC TGGCCTGCCC GCGGATGTGA CTGCATCGCT GCTCGAATGG
CTCGCCTCGC ACGACCATCG CGCGCAACTG GCGAAGCTCG ACGCGCTGCG CGGCGAGTTG
CTCGCTGCCA TGCCTGCTGA GGCCGCCGAA GAAGGCGTGC TGGCCGGCAA GACAGTCGTT
TTGACCGGCA CATTGCCGAA CCTCACGCGT GACGAAGCCA AGGCCATGCT GGAAGCAGCA
GGCGCCAAGG TATCGGGTTC GGTGTCGAAA AAGACCGACT ACGTTGTCGC CGGAGAAGAT
GCCGGCAGCA AGCTCGCCAA AGCCGAAGAA TTGAACGTGA AGGTTCTGGA CGAAGCGGGT
ATGCTCGCGC TGTTAAAAAA ACCGGCGGGA GACCAGGCAT GA
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| Protein sequence | MRKIAEPASG TTPEARAAWL RAELNRYAHE YYVLDQPSVP DAEYDRLYRE LEALEAEHPE
LKTPDSPTLR VGGAVLPEFA AVRHVIPMLS IRTETDTTPN GARAFDASVR RELGLDDTDP
PVEYAAELKF DGLAISLRYE RGYLVQAATR GDGTTGEDVT QNIRTIRQIP LGLSPVDGHV
PDVLEVRGEV YMRRDDFEKL NARQRERGDK TFVNPRNTAA GAVRQLDPKM AAERPLSFFA
YGLGEVAGWK GMPGTHSSML DVLQAFGFPV SNERAAVAGG EGLVRFHEAI RAKRDSLPFD
IDGVVYKVNS LALQRELGFR SREPRWAVAH KYPAQEALTT VESIDVQVGR TGAITPVARL
VPVFVGGVTV TNATLHNEDE VRRKDVRVGD TVIVRRAGDV IPEVVSVVLD RRPMDDVPGS
DLFNPQQQPK YPPFELPKTC PVCGSHVVRE EGEAVARCSG GLFCSAQRKE AIRHFAGRRM
MDIEGLGERY IDNLVELDYV HGIADLYKLT LEDFLEMKRR ADERDGVTPE TVSAGKIATK
WAENLLEGIQ ASKTPPLARF LFALGIRHVG ESTAKTLADW LGSLAMIRRA PAPLLLALPD
VGATVAEAIA DFFAEPKNQQ ALDALLEAGV APQGEHAPNA KLREKLEPAE LYATLGVPKL
TATRAKQLAV AAPTLAQLAS VEPDQLAGLP ADVTASLLEW LASHDHRAQL AKLDALRGEL
LAAMPAEAAE EGVLAGKTVV LTGTLPNLTR DEAKAMLEAA GAKVSGSVSK KTDYVVAGED
AGSKLAKAEE LNVKVLDEAG MLALLKKPAG DQA
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