| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1330 |
|---|
| Symbol | dapD |
|---|
| ID | 8018975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1403939 |
|---|
| End bp | 1404766 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644830110 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_002981291 |
|---|
| Protein GI | 241662931 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAAC AACTGCAATC CCTGATCGAC CAAGCGTGGG AAGACCGCGC CAACCTGTCG
CCCAAGTCCG CTCCGGCCGA TATCCGCGAA GCCGTCGCCA ACGTGATCGG GCAGCTCGAT
CGTGGCGCGC TGCGTGTGGC CGAGAAGAAG GACGGCGAGT GGATCGTCAA TCAGTGGATC
AAGAAGGCCG TGCTGCTGTC GTTCCGCCTG GAAGATAACG CACCGATGGC TGCCGGCGGC
TTCACGCAGT TCTACGACAA GGTGCCGAGC AAGTTCGCCG ACTACACGGC AGAAGACTTC
GCCGCGGGCG GCTTCCGCGT GGTGCCGCCG GCGGTGGCGC GCCGTGGCTC GTTCATCGCC
AAGAACGCCG TGCTGATGCC GTCGTACGTG AACATCGGCG CTTACGTTGA CGAAGGCACG
ATGGTCGACA CCTGGGCCAC CGTCGGTTCG TGCGCACAGA TCGGCAAGAA CGTCCACCTG
TCGGGCGGTG TGGGCATCGG CGGCGTGCTG GAGCCGCTGC AGGCCAACCC GGTCATCATC
GAAGACAACT GCTTCATCGG TGCGCGCTCG GAAGTCGTGG AAGGCGTGAT CGTTGAAGAA
AACTCGGTGA TCTCGATGGG CGTGTACCTG GGCCAGTCGA CCAAGATTTA CGATCGCGAA
ACCGGTGAAG TCAGCTACGG CCGCATCCCG GCGGGCTCGG TGGTGGTGGC GGGCAACCTG
CCGTCGAAGG ACGGCTCGCA CAGCCTGTAC TGCGCCGTGA TCGTCAAGAA GGTCGACGCG
AAGACGCGCG CCAAGGTTGG CCTGAACGAG CTGCTGCGCG GCGATTAA
|
|---|
| Protein sequence | MTQQLQSLID QAWEDRANLS PKSAPADIRE AVANVIGQLD RGALRVAEKK DGEWIVNQWI
KKAVLLSFRL EDNAPMAAGG FTQFYDKVPS KFADYTAEDF AAGGFRVVPP AVARRGSFIA
KNAVLMPSYV NIGAYVDEGT MVDTWATVGS CAQIGKNVHL SGGVGIGGVL EPLQANPVII
EDNCFIGARS EVVEGVIVEE NSVISMGVYL GQSTKIYDRE TGEVSYGRIP AGSVVVAGNL
PSKDGSHSLY CAVIVKKVDA KTRAKVGLNE LLRGD
|
|---|
| |