| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1327 |
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| Symbol | |
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| ID | 8018972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 1401929 |
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| End bp | 1403080 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644830107 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_002981288 |
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| Protein GI | 241662928 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.158007 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCCCA CGCTTGCCCT CACTGAAGAC CTGATCCGCC GCCGCTCCGT CACGCCCGAA
GACAAGGGCT GCCAGGACGT GCTGATCGAA CGCCTGACCG CCGCCGGCTT CGAATGCGAA
ACCGTGGTCA GCGGCCCGGA CCACTTTCGC GTGACCAACC TGTGGGCCGT CAAGCGCGGC
ACGGCCGGCA CCGCAGGCAA GCTGCTCGTC TTCGCGGGCC ACACCGATGT GGTGCCCACC
GGCCCCGTCG AGCAATGGCA CTCCGACCCG TTCGAGCCCA CACACCGTGA CGGCAAGCTC
TACGCGCGCG GCGCGGCAGA CATGAAGACG TCGATTGCCG GCTTCGTGGT GGCCTCGGAA
GAATTTGTTG CCAAGCACCC GGACCACGCC GGCTCGATCG GCTTTCTGAT CACCAGCGAC
GAAGAAGGCC CCGCGCACGA CGGCACCGTC AAGGTATGCG ACCTGCTCCG CGCACGCGGC
GAGCGCCTCG ATTACTGCGT GGTCGGTGAG CCGACTTCGG TGTCGACCCT CGGCGACATG
GTCAAGAACG GGCGGCGCGG TTCGTTGTCG GGCAAGCTCA CGGTGAATGG TGTGCAGGGA
CACATCGCGT ATCCGCATCT GGCCAAGAAC CCGATCCACC TGGCCGCGCC GGCGCTGGCT
GAGCTGGCCG CCACGAAGTG GGACGACGGC AATGCATACT TCCCGCCGAC CACGTGGCAG
ATGTCGAATA TTCACGGCGG CACGGGCGCG ACGAACATCA TTCCTGGCCA CGTCACGATC
GACTTCAACT TCCGCTTCTC GACCGCCAGC ACGCCGGACG GCCTGAAGGC GCGCGTGCAC
GGCATTCTCG ATGCGCACGG CCTCGACTAC ACGCTCGACT GGACGCTGGG CGGCGAGCCC
TTTCTGACCG AGCGCGGCGA GCTGTCCGAT GCCCTCGCCT CCGCCATCCA GGCCGAATGC
GGCGTGACGA CGGAGCTATC GACCACGGGT GGCACGTCGG ACGGCCGCTT CATCGCCAAG
ATCTGCCCGC AGGTCATTGA GTTCGGCCCG CCGAACGCGA GCATCCACAA GATCGACGAA
CACGTCGAAG TGGCATTCAT CGAGCCGCTG AAAAACGTGT ATCGCCGCGT CTTGGAAACG
TTGATCGCCT GA
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| Protein sequence | MQPTLALTED LIRRRSVTPE DKGCQDVLIE RLTAAGFECE TVVSGPDHFR VTNLWAVKRG
TAGTAGKLLV FAGHTDVVPT GPVEQWHSDP FEPTHRDGKL YARGAADMKT SIAGFVVASE
EFVAKHPDHA GSIGFLITSD EEGPAHDGTV KVCDLLRARG ERLDYCVVGE PTSVSTLGDM
VKNGRRGSLS GKLTVNGVQG HIAYPHLAKN PIHLAAPALA ELAATKWDDG NAYFPPTTWQ
MSNIHGGTGA TNIIPGHVTI DFNFRFSTAS TPDGLKARVH GILDAHGLDY TLDWTLGGEP
FLTERGELSD ALASAIQAEC GVTTELSTTG GTSDGRFIAK ICPQVIEFGP PNASIHKIDE
HVEVAFIEPL KNVYRRVLET LIA
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