Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1318 |
Symbol | |
ID | 8018963 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 1392208 |
End bp | 1394097 |
Gene Length | 1890 bp |
Protein Length | 629 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644830098 |
Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
Protein accession | YP_002981279 |
Protein GI | 241662919 |
COG category | [R] General function prediction only |
COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0144402 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACAGCAA CCAAACAGCC CGGCTCCAAC AGCGTCATTG CCATGCCCGA CCAGCGTGTC GTGCAGGTGC AAGACCTGAG CGTGCGCTTT GCCACGTCCG AGCGCGTGGT CGACGCGGTG CGCAACCTGT CGTTCCACGT CGACCGGGGC GAGACGCTGG CCGTGGTCGG CGAATCGGGT TCGGGCAAGT CGGTGACGTC GCTGGCGCTG ATGCGGCTGG TGGAACATGG CGGCGGCAAG ATCATCGGCG GCCAAATCCA TCTGCGCCGC CGCAACGGCG AGGTGCTGGA CTTGGCGAAC GCCAGCCCGG CGGCCATGCG CGGCGTGCGC GGTGCCGACA TCGCGATGAT CTTCCAGGAG CCGATGACCT CGCTCAACCC GGTCTTCACC GTGGGCGAGC AGATTGCCGA GTCGATCCGC CTGCACCAGG GCAAGCCCGC CAGCGAGGCC AAGGCCGAGG CGCTGCGCAT GCTGGAGCTG GTGCGCATTC CGGAAGCGCG CAATGTGCTG GGGCGCTATC CGCACCAACT GTCGGGCGGC ATGCGCCAGC GCGTGATGAT TGCGATGGCG CTGTCATGTA AGCCGTCGTT GCTGATTGCG GATGAGCCGA CCACCGCGCT GGACGTGACC ATCCAGGCGG AAATCCTGCA ACTGATCCGC GCGCTGCAGC AGGAGCTGCA GATGGCCGTG GTGTTCATCA CGCATGACAT GGGTGTGGTG GCGGAAGTGG CCGACCGCGT GCTCGTGATG TACAAGGGCG ATCGCGTGGA AGAGGGCCCG TCGGCCACCG TGTTTGCACA GCCGGCGCAT CCGTATACGC GTGCGCTGCT GTCGGCGGTG CCGCGCCTGG GTTCGATGCA GGGCACCGAT GGCCCGGCGC GCTTTCCGCT GTTGCGTGTG GATGGCACGT CCGCTGCGGT CGATACGACA CCGCAGCCGG CAGCGTCGCA CGATGTGCAA CCCATTTTGC GTGTGCGTGA TCTCGTCACG CGCTTTGACG TGCCTACGGG CATCTTCGGC CGCGTTACGC GCCGGGTGCA TGCGGTGGAG CAGGTCAGTT TCGATCTCTA CCCTGGTGAG ACGCTGGCGC TGGTCGGCGA ATCGGGCTGC GGCAAGTCGA CGACGGGACG GTCGCTCTTG CGCCTGGTGG ACAGCCAGAG CGGCAGCATC GAATTTGCCG GCCAAAACAT CGGCGAGCTG AAGGGGCCGG CGCTCCAGAC GCTTCGCCGA AACATCCAGT TCATCTTCCA GGACCCATTC GCCTCGCTGG ACCCGCGCGT GCCGGTCGGC TACTCCATCA TGGAGCCGCT GCTGGTGCAC AAGGTGGCTT CCGGCAAAGA GGCACAGCAA CGCGTGGAAT GGCTGCTGGA CAAGGTGGGC CTGCAGGCCG CGCATGCATC GCGCTATCCG CACGAGTTCT CGGGCGGGCA GCGCCAGCGC ATCTGCATTG CGCGCGCGCT GGCATTGAAC CCGAAGGTGG TGATTGCGGA TGAGTCGGTG TCCGCGCTCG ACGTGTCGAT CCAGGCGCAG ATCGTCAACC TGATGCTCGA CCTGCAGAAG GAGTTTGGCG TTGCGTTCCT GTTCATCTCA CACGACATGG CGGTGGTGGA GCGCATCAGC CATCGCGTGG CGGTGATGTA TCTCGGCCAG ATCGTCGAGA TCGGCCCGCG CCGTGCGATC TTCGAGAACC CGCAGCACCC CTATACGAAG AAGCTGATGT CGGCCGTGCC GATTGCGGAC CCGGCGCGCC GTCACCTGAA GCGTGAACTG TCGACGCACG AAATTCCAAG CCCGATCCGC GCCATTGGCG ACCTGCCGGT GGTGCAGCCG TTGGTGCAAG TGGCGCCAGA CCACTTTGTT GCCCGCCACT CGATTGGCGG CGCGTATTAA
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Protein sequence | MTATKQPGSN SVIAMPDQRV VQVQDLSVRF ATSERVVDAV RNLSFHVDRG ETLAVVGESG SGKSVTSLAL MRLVEHGGGK IIGGQIHLRR RNGEVLDLAN ASPAAMRGVR GADIAMIFQE PMTSLNPVFT VGEQIAESIR LHQGKPASEA KAEALRMLEL VRIPEARNVL GRYPHQLSGG MRQRVMIAMA LSCKPSLLIA DEPTTALDVT IQAEILQLIR ALQQELQMAV VFITHDMGVV AEVADRVLVM YKGDRVEEGP SATVFAQPAH PYTRALLSAV PRLGSMQGTD GPARFPLLRV DGTSAAVDTT PQPAASHDVQ PILRVRDLVT RFDVPTGIFG RVTRRVHAVE QVSFDLYPGE TLALVGESGC GKSTTGRSLL RLVDSQSGSI EFAGQNIGEL KGPALQTLRR NIQFIFQDPF ASLDPRVPVG YSIMEPLLVH KVASGKEAQQ RVEWLLDKVG LQAAHASRYP HEFSGGQRQR ICIARALALN PKVVIADESV SALDVSIQAQ IVNLMLDLQK EFGVAFLFIS HDMAVVERIS HRVAVMYLGQ IVEIGPRRAI FENPQHPYTK KLMSAVPIAD PARRHLKREL STHEIPSPIR AIGDLPVVQP LVQVAPDHFV ARHSIGGAY
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