| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1316 |
|---|
| Symbol | |
|---|
| ID | 8018961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1390199 |
|---|
| End bp | 1391194 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644830096 |
|---|
| Product | transcriptional regulator, RpiR family |
|---|
| Protein accession | YP_002981277 |
|---|
| Protein GI | 241662917 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.011222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATGG CGAAATCCAC CAGCAAGCGC ACGGATGTGT CGAAGGGCGC ATTCGCGGCC
GATGCGACGG TCTCCGAGCG CATTGGAGCG GCCCTTGCCA CGCTCACGCC GGCGCACCAG
CGCATGGCGG AATACGTGCT GGCGAACCCG TTCCGCGCCG CCACCATGCG CATCGACGAA
TTTGCCGCCG CGGTGGACAT GTCGATTGCC ACGGCCAACC GCTTTGCGCT GGCGCTGGGC
TTTGACGGCT ATCCGCAGTT CCGAGCGGGG CTGCTGCGCG GCTTCGAAGC GACGCTCGCG
CCGGTGGAAA AACTGCGTCA CGAGCTGGCA CGCCCGGCCT CCAGCGCGGA AATCTTTGCC
GCCTCGCTCA ACGAAGACAT CGCCAACCTT GACGCCACGC GCCGCATGCT CGACGCCGCC
GCGTGTGAAC GGGCGGTCGA CGCCATCCTC GGCGCACAGC GCATCTATGT GATGGGCTTT
GGCGCCAGCG GCTATCTGGC GGGGCTGCTG CGCCATGGGC TCGATCTTTA CTGCGACACG
GTGATCGCCG TTTCGCAGCC GGGCGGCGCC TCCGATGCAG CGCGCCAACT GCGCAAGATC
GGGCCGAAGG ACTTGCTGAT CGCAATCGCA TTCCCGCGCT ATGCGGCAGA CACCATCACG
CTGGCCAAAC GGGCCGGCGA GCAAGGCTGC CAACTGCTGG CGCTGACCGA CAGCCCGACG
TCGCCGCTCG CGCCGCTGGC CGACATTGCG TTGTATGCAC GGCCGGAGCG GCAGTTCTCG
GCCACGTCGG ACACGGCTGC CGTGGCCCTG TTCGAAGCGC TCTGCGGCGC AGTGGCGCAT
CGCTCGGCGC ATTCGCTGGA ATCGGCCGAA CGCCTGACTG AATTTGTGCT GCCCTGGCTG
CATACCGCCC CGGCGCCGCG CGCCAACGAC GCCGCGAACG CTTCCGGCAC ACCCACGACG
ACCCGACGCG GCCGCAAGCG CACCGCTGAA AACTGA
|
|---|
| Protein sequence | MNMAKSTSKR TDVSKGAFAA DATVSERIGA ALATLTPAHQ RMAEYVLANP FRAATMRIDE
FAAAVDMSIA TANRFALALG FDGYPQFRAG LLRGFEATLA PVEKLRHELA RPASSAEIFA
ASLNEDIANL DATRRMLDAA ACERAVDAIL GAQRIYVMGF GASGYLAGLL RHGLDLYCDT
VIAVSQPGGA SDAARQLRKI GPKDLLIAIA FPRYAADTIT LAKRAGEQGC QLLALTDSPT
SPLAPLADIA LYARPERQFS ATSDTAAVAL FEALCGAVAH RSAHSLESAE RLTEFVLPWL
HTAPAPRAND AANASGTPTT TRRGRKRTAE N
|
|---|
| |