Gene Rpic12D_1277 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1277 
Symbol 
ID8018922 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1351487 
End bp1352518 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content67% 
IMG OID644830057 
Productaliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein 
Protein accessionYP_002981238 
Protein GI241662878 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID[TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.358454 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.140101 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATCG ATTTCCAACG CCGCCGCCTG CTCAGCGCTA CCGTTGCCGG CGCATCGCTG 
GCCACGCTTG CGCCGGTTGC GCATGCCGCC AATGCCGCTA CCGCCGCTCC GGCGGCTGCA
GCTTTGCCGA AGGTGACGCC GCCCGCGCAA CTGCGCATCG GTTTTCAGAA GAGCGCAGTC
AACCTCGTCA TCGTGAAAGA GAACCGGGCG CTGGAGCAGC GCTTTCCGGG TACCAAGATC
AGTTGGCTGG AGTTTCCAGC CGGGCCGCAG CAGCTTGAAG CGTTGTCTGC GGGCAGTCTC
GACCTCGCCA TCACGGGCGA TACGCCGCCG GTGTTCGCGC AGGCTGCCGG CAAGGACCTG
CGCTACGTGG GCGTGGAGCC GCCCAAGCCG GACAGCTCCG CCATCCTCGT GCAGCAGGAT
TCGACCCTCA AGACGCTGGC CGACCTGAAG GGCAAGCGCG TGGCGCTGCA GAAGGGTTCG
AGCGCGCATT TCCTGATCGT GCGCGGCCTG CAGAAGGGCG GGCTGAGCTT TGCCGACATC
CAGCCCGTGT ACCTCACGCC AGCCGATGCC CGCGCCGCCT TTGAGCGCGG CAGCGTCGAC
GCCTGGGGCA TCTGGGATCC GTATTACGCC GCCACCGAAC TGGCGATCAA GCCGCGCGTG
CTGGCCACCG GGCGCACGCT GTCGTCCAAC AACTCGTTCT ACTTCGCGCC GACGGCCTTT
ACGGAAAAGC ACGGCGACAC CATCGCCGCC ATCTTTGCAG AGCTGTCGCG CGCCGATCGC
CTCGTGCAGG AGAACCGCAA GGAAGCTGCG CAGCGCATTG CAGATTTTTC GGGGCTGTCG
CTGGCGACGG TGCATCTGTT CCTGTCGCGC CGGCCGCCTT CGCCGGTGCG GCCGGTGACG
CCTGAAGCGA TTGCCGAGCA GCAGCGCGTG GCCGATGCCT TTCACGGGCT GGGGCTGATT
CCGCGCCCGG TCAAGCCGAT CGAACTGGTC TGGCACCCGA CCCCCGCGCA GCTGGCCATT
GCCCGCGCTT GA
 
Protein sequence
MTIDFQRRRL LSATVAGASL ATLAPVAHAA NAATAAPAAA ALPKVTPPAQ LRIGFQKSAV 
NLVIVKENRA LEQRFPGTKI SWLEFPAGPQ QLEALSAGSL DLAITGDTPP VFAQAAGKDL
RYVGVEPPKP DSSAILVQQD STLKTLADLK GKRVALQKGS SAHFLIVRGL QKGGLSFADI
QPVYLTPADA RAAFERGSVD AWGIWDPYYA ATELAIKPRV LATGRTLSSN NSFYFAPTAF
TEKHGDTIAA IFAELSRADR LVQENRKEAA QRIADFSGLS LATVHLFLSR RPPSPVRPVT
PEAIAEQQRV ADAFHGLGLI PRPVKPIELV WHPTPAQLAI ARA